LOCUS       XM_006248267            1846 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Cd47 molecule (Cd47), transcript
            variant X5, mRNA.
ACCESSION   XM_006248267
VERSION     XM_006248267.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248267.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006248267.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1846
                     /gene="Cd47"
                     /gene_synonym="Itgp"
                     /note="Cd47 molecule; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 30 ESTs, 4 long
                     SRA reads, 9 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 233
                     samples with support for all annotated introns"
                     /db_xref="GeneID:29364"
                     /db_xref="RGD:2308"
     CDS             691..1623
                     /gene="Cd47"
                     /gene_synonym="Itgp"
                     /codon_start=1
                     /product="leukocyte surface antigen CD47 isoform X5"
                     /protein_id="XP_006248329.1"
                     /db_xref="GeneID:29364"
                     /db_xref="RGD:2308"
                     /translation="MWPLAAALLLGSCCCGSAQLLLSKVKSVEFTSCNDTVVIPCKVL
                     NVEAQSTDEMFVKWKLNKSYIFIYDGNKNSTTREQNFTSAKISVSDLLKGIASLTMDT
                     HEAVVGNYTCEVTELSREGKTVIELKNRPVSWFSTNEKILIVIFPILAILLFWGKFGI
                     LTLKYKSSHTNKRIILLLVAGLALTLIVVVGAILFIPGEKPVKNASGLGLIVISTGIL
                     ILLQYNVFMTAFGMTSFTIAILITQVLGYVLAVVGMCLCIMACEPVHGPLLISGLGII
                     ALAELLGLVYMKFVASNQRTIQPPRKAVEEPLNE"
ORIGIN      
        1 cttctggaac aagtcagacc agggagatct cagggccagg gggagccaga gggaaggagc
       61 tccttggggg ccagcacctg gtcacagcgc cctctctccg ccctgccccg aggctccagg
      121 gccgcaagcc ttgggaggga aggtcgtgaa aaccagcaga gcccacaccg ggagaggagg
      181 gagggggact tgggctgggg ttgggcggct ccgaggtcag ggcgagcttg gccagggaga
      241 gtggagagcc gcctggctgc gcatggggcg cgtgctgtga gttccagtga gcgtgtgtgc
      301 tccacgctcc gtctttcagg ccggcccagg acacgaagcc ggaagagagc tggagagacc
      361 ggccgtgagc agagagtgca gctcgcacag cccgggaaca ggctagtgct tggcgctccc
      421 cgccagagcc tgcccagagc tgggtgtgag gctggcttca cgtcaacgag cagaggcggc
      481 caggcggggc ggagtgcgcg tgcgcggcta gcggggcgtg ggagcgggcg cgggcgcggg
      541 gcggcgagca cgcgcacgcg cgtaccccgg gcagcctggg cggccgttcc tgcctatcac
      601 ggctgcggcg ctgctggtcg ttctcttgaa ggcagcggag gcggcggctg ctccagacac
      661 ctgcggcggc gaccccccgg cggcgcggag atgtggccct tggcggcggc gctgttgctg
      721 ggctcctgct gctgcggttc agctcaactc ctgcttagta aagtcaaatc tgtagagttc
      781 acgtcatgca atgacactgt ggtcatccct tgcaaagtcc ttaatgtgga agcccaaagc
      841 accgatgaaa tgtttgtgaa gtggaagttg aacaaatcgt atattttcat ctatgatgga
      901 aataaaaata gcactactag agaacaaaac tttaccagtg caaaaatctc ggtctcagac
      961 ttgctcaaag gcattgcctc tttgacaatg gatacccatg aggctgtggt gggaaactac
     1021 acctgtgaag tgactgagct ttccagagaa ggcaaaacag ttatagagct gaaaaaccgc
     1081 ccagtttcgt ggttttctac aaatgaaaag atcctcattg ttattttccc aattttggct
     1141 atactcctgt tctggggaaa gtttggtata ttaacactca aatacaagtc cagccatacg
     1201 aataagagaa tcattctgct gctggttgcc gggctggcgc tcacactcat cgtggttgtt
     1261 ggcgccatcc ttttcatccc gggagagaag cccgtgaaga acgcttctgg tcttggcctc
     1321 attgtaatct ccacaggaat attaatactg cttcagtaca atgtgtttat gacagctttt
     1381 ggaatgacct ctttcaccat tgccatattg atcactcaag tgctgggcta tgtccttgct
     1441 gtggtcggga tgtgtctctg catcatggct tgtgaaccag tgcacggccc ccttttgatt
     1501 tcaggtttgg gaatcatagc tctagcagaa ttacttggac tagtttatat gaagtttgtc
     1561 gcttccaacc agcggactat acaacctcct aggaaagctg tagaggaacc ccttaacgaa
     1621 taactgaagg gaagtgatgg actgtaactt gaaagtcaga agtggaagaa ttcagttgtc
     1681 tgagcaccat ggccttcaca actcacagct ggaaggaaca cacaacagtg actgactttc
     1741 atctctgaaa aaagtcattg aaccataaat gaatattaca gttaagttta tattaaagca
     1801 gctgtaattt acgtaataaa aaatatatga tgtgctgtgt aaccaa
//
