LOCUS       NM_001394215            1694 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus Cd300 molecule-like family member F (Cd300lf),
            transcript variant 1, mRNA.
ACCESSION   NM_001394215 XM_008768341
VERSION     NM_001394215.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Haga,K., Fujimoto,A., Takai-Todaka,R., Miki,M., Doan,Y.H.,
            Murakami,K., Yokoyama,M., Murata,K., Nakanishi,A. and Katayama,K.
  TITLE     Functional receptor molecules CD300lf and CD300ld within the CD300
            family enable murine noroviruses to infect cells
  JOURNAL   Proc Natl Acad Sci U S A 113 (41), E6248-E6255 (2016)
   PUBMED   27681626
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Orchard,R.C., Wilen,C.B., Doench,J.G., Baldridge,M.T., McCune,B.T.,
            Lee,Y.C., Lee,S., Pruett-Miller,S.M., Nelson,C.A., Fremont,D.H. and
            Virgin,H.W.
  TITLE     Discovery of a proteinaceous cellular receptor for a norovirus
  JOURNAL   Science 353 (6302), 933-936 (2016)
   PUBMED   27540007
REFERENCE   3  (bases 1 to 1694)
  AUTHORS   Tian,L., Choi,S.C., Lee,H.N., Murakami,Y., Qi,C.F.,
            Sengottuvelu,M., Voss,O., Krzewski,K. and Coligan,J.E.
  TITLE     Enhanced efferocytosis by dendritic cells underlies memory T-cell
            expansion and susceptibility to autoimmune disease in
            CD300f-deficient mice
  JOURNAL   Cell Death Differ 23 (6), 1086-1096 (2016)
   PUBMED   26768664
REFERENCE   4  (bases 1 to 1694)
  AUTHORS   Moshkovits,I., Karo-Atar,D., Itan,M., Reichman,H., Rozenberg,P.,
            Morgenstern-Ben-Baruch,N., Shik,D., Ejarque-Ortiz,A., Hershko,A.Y.,
            Tian,L., Coligan,J.E., Sayos,J. and Munitz,A.
  TITLE     CD300f associates with IL-4 receptor alpha and amplifies
            IL-4-induced immune cell responses
  JOURNAL   Proc Natl Acad Sci U S A 112 (28), 8708-8713 (2015)
   PUBMED   26124135
REFERENCE   5  (bases 1 to 1694)
  AUTHORS   Izawa,K., Isobe,M., Matsukawa,T., Ito,S., Maehara,A., Takahashi,M.,
            Yamanishi,Y., Kaitani,A., Oki,T., Okumura,K., Kitamura,T. and
            Kitaura,J.
  TITLE     Sphingomyelin and ceramide are physiological ligands for human
            LMIR3/CD300f, inhibiting FcepsilonRI-mediated mast cell activation
  JOURNAL   J Allergy Clin Immunol 133 (1), 270-3 (2014)
   PUBMED   24035150
REFERENCE   6  (bases 1 to 1694)
  AUTHORS   Izawa,K., Yamanishi,Y., Maehara,A., Takahashi,M., Isobe,M., Ito,S.,
            Kaitani,A., Matsukawa,T., Matsuoka,T., Nakahara,F., Oki,T.,
            Kiyonari,H., Abe,T., Okumura,K., Kitamura,T. and Kitaura,J.
  TITLE     The receptor LMIR3 negatively regulates mast cell activation and
            allergic responses by binding to extracellular ceramide
  JOURNAL   Immunity 37 (5), 827-839 (2012)
   PUBMED   23123064
REFERENCE   7  (bases 1 to 1694)
  AUTHORS   Kim,E.J., Lee,S.M., Suk,K. and Lee,W.H.
  TITLE     CD300a and CD300f differentially regulate the MyD88 and
            TRIF-mediated TLR signalling pathways through activation of SHP-1
            and/or SHP-2 in human monocytic cell lines
  JOURNAL   Immunology 135 (3), 226-235 (2012)
   PUBMED   22043923
REFERENCE   8  (bases 1 to 1694)
  AUTHORS   Choi,S.C., Simhadri,V.R., Tian,L., Gil-Krzewska,A., Krzewski,K.,
            Borrego,F. and Coligan,J.E.
  TITLE     Cutting edge: mouse CD300f (CMRF-35-like molecule-1) recognizes
            outer membrane-exposed phosphatidylserine and can promote
            phagocytosis
  JOURNAL   J Immunol 187 (7), 3483-3487 (2011)
   PUBMED   21865548
REFERENCE   9  (bases 1 to 1694)
  AUTHORS   Chung,D.H., Humphrey,M.B., Nakamura,M.C., Ginzinger,D.G.,
            Seaman,W.E. and Daws,M.R.
  TITLE     CMRF-35-like molecule-1, a novel mouse myeloid receptor, can
            inhibit osteoclast formation
  JOURNAL   J Immunol 171 (12), 6541-6548 (2003)
   PUBMED   14662855
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Apr 8, 2021 this sequence version replaced XM_008768341.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GU057984.1, SRR26360190.2673823.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                JAXUCZ010000010.1  100874927-100875022 c
            97-438              JAXUCZ010000010.1  100868440-100868781 c
            439-502             JAXUCZ010000010.1  100866541-100866604 c
            503-642             JAXUCZ010000010.1  100862828-100862967 c
            643-665             JAXUCZ010000010.1  100860894-100860916 c
            666-794             JAXUCZ010000010.1  100860145-100860273 c
            795-1694            JAXUCZ010000010.1  100858924-100859823 c
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..1694
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /note="Cd300 molecule-like family member F"
                     /db_xref="GeneID:287818"
                     /db_xref="RGD:1309733"
     exon            1..96
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..959
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; CMRF35-like molecule 1; CD300 antigen-like
                     family member F"
                     /codon_start=1
                     /product="CMRF35-like molecule 1 isoform 1 precursor"
                     /protein_id="NP_001381144.1"
                     /db_xref="GeneID:287818"
                     /db_xref="RGD:1309733"
                     /translation="MHLSLLALFLFWISGCFTAQDPVTGPEEVSGYEQGSLTVWCRYG
                     SWWKDYSKYWCRGPKRSSCEIRVETDASERLVKENHVSIRDDQTNFTFTVTMEDLRMS
                     DAGIYWCGITKAGYDHMFKVHVSINPVTTTVKETSTLSTQTSHYSDNRYDSGGVGDGN
                     GFLDLSVLLPVISAALLLLLLVVSLIAWRMVRRQKKAAGPPSGQPLEDDLCYANLSLQ
                     QPRTSPLKKGSSMSSSGKDHQEEVEYVTMAPFPREEISYAALSLASLGQEPTYSNTAC
                     LVTHGPRTNLGEETTEYSSIRRPMP"
     exon            97..438
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /inference="alignment:Splign:2.1.0"
     exon            439..502
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /inference="alignment:Splign:2.1.0"
     exon            503..642
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /inference="alignment:Splign:2.1.0"
     exon            643..665
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /inference="alignment:Splign:2.1.0"
     exon            666..794
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /inference="alignment:Splign:2.1.0"
     exon            795..1694
                     /gene="Cd300lf"
                     /gene_synonym="CD300f; CLM-1; RGD1309733"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catgtagcct gctcttgctg gcaggctccc ccaaggtgat ccggtgagag aagatgcatt
       61 tgtcattgct ggctctcttt ctcttctgga tctcaggctg cttcactgct caggatccag
      121 tcacaggtcc agaggaggtg agcggttacg agcagggctc cctgacagtg tggtgtcgat
      181 atggctcatg gtggaaggat tacagcaagt actggtgccg aggacctaag aggagttcct
      241 gtgagattcg agttgaaacc gatgcatcag agcgcttggt gaaggagaac catgtgtcca
      301 tcagggacga ccagacaaac ttcaccttca cagtgaccat ggaggacctg aggatgagcg
      361 atgctggcat ttactggtgt ggaattacaa aggctggata tgatcacatg tttaaagttc
      421 atgtgagcat taacccagtg acaaccactg taaaagagac cagcacgctt tcaacgcaga
      481 ccagccacta ctctgataac aggtatgaca gtggtggtgt cggcgacggt aatgggtttc
      541 tggatctcag cgtgctcctc ccagtcatct ctgcagccct gttgcttctc ttgctggtgg
      601 tctcactaat tgcttggagg atggtgagga gacagaagaa agctgctgga ccaccctcag
      661 ggcagcctct ggaggatgat ctctgttatg caaacctgtc actgcagcag cccagaacct
      721 cccctttgaa aaagggctcc tccatgtcct cctctggcaa ggaccaccaa gaggaagtgg
      781 aatacgtcac catggctccc ttccctaggg aggagatttc atacgctgct ctgtctttgg
      841 cgagcttggg tcaggaacct acttacagca acactgcctg ccttgtcacc catggtccca
      901 ggacaaacct tggagaggag accacagagt acagcagcat caggaggccc atgccttgat
      961 cttggtccct gaaggtggcc cgggagcatg cgtttgcaca tcggcctctg tgcctgcttc
     1021 cttaccaggc ctggcgggcg actgaaactc tgaacgttca tctctcatgg tcttcagctc
     1081 taccttgagc ttggagttca gccttggggg gctccagtga attaaggctc cttccacatc
     1141 tctccacata gagccaacgc accttggaag gtaccaggca ggctgcttca gggatgctgt
     1201 gtaattcata acggtggcaa taataatggc aaccaacctt tatttattgt tattcatacg
     1261 ggtgcccctc ccggacattt tcatcctcat acccaaaatc tgtgaattat tcttacaaag
     1321 gaagacagat atatatgtgt ttaagttagg gattttgaga tttaagtctg ttattatcca
     1381 agtaggtccc atataaagct acaagggtcc ctttaaaggg gaatagagca agtcagagaa
     1441 aaagggggag ggggagggga gaggaaggga gaaagagggg aggagagaga gggggtggag
     1501 agaggcgaca acagaagcag aaggtggagg gatacagcag gagccaggat gctgtgcgtc
     1561 cagcagtcaa ccaagacaag tatcagacag acccctgggt gggacatctt agagccatta
     1621 gtcctgctag ggttgttgaa ttgactgtgt actttcagaa ttgtacaaga ataaagctgt
     1681 attgttttca ttta
//
