LOCUS       NM_001408733            1932 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus Cd300 molecule-like family member D (Cd300ld),
            mRNA.
ACCESSION   NM_001408733 XM_002727841
VERSION     NM_001408733.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Haga,K., Fujimoto,A., Takai-Todaka,R., Miki,M., Doan,Y.H.,
            Murakami,K., Yokoyama,M., Murata,K., Nakanishi,A. and Katayama,K.
  TITLE     Functional receptor molecules CD300lf and CD300ld within the CD300
            family enable murine noroviruses to infect cells
  JOURNAL   Proc Natl Acad Sci U S A 113 (41), E6248-E6255 (2016)
   PUBMED   27681626
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Orchard,R.C., Wilen,C.B., Doench,J.G., Baldridge,M.T., McCune,B.T.,
            Lee,Y.C., Lee,S., Pruett-Miller,S.M., Nelson,C.A., Fremont,D.H. and
            Virgin,H.W.
  TITLE     Discovery of a proteinaceous cellular receptor for a norovirus
  JOURNAL   Science 353 (6302), 933-936 (2016)
   PUBMED   27540007
REFERENCE   3  (bases 1 to 1932)
  AUTHORS   Nakano,T., Tahara-Hanaoka,S., Nakahashi,C., Can,I., Totsuka,N.,
            Honda,S., Shibuya,K. and Shibuya,A.
  TITLE     Activation of neutrophils by a novel triggering immunoglobulin-like
            receptor MAIR-IV
  JOURNAL   Mol Immunol 45 (1), 289-294 (2008)
   PUBMED   17543387
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jun 22, 2022 this sequence version replaced XM_002727841.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ228924.1, SRR26643284.14510.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676806 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000010.1  100614694-100614818 c
            126-467             JAXUCZ010000010.1  100611801-100612142 c
            468-809             JAXUCZ010000010.1  100599663-100600004 c
            810-921             JAXUCZ010000010.1  100584347-100584458 c
            922-1932            JAXUCZ010000010.1  100581960-100582970 c
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..1932
                     /gene="Cd300ld"
                     /gene_synonym="AABR07030771.1"
                     /note="Cd300 molecule-like family member D"
                     /db_xref="GeneID:100361633"
                     /db_xref="RGD:2319739"
     exon            1..125
                     /gene="Cd300ld"
                     /gene_synonym="AABR07030771.1"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1069
                     /gene="Cd300ld"
                     /gene_synonym="AABR07030771.1"
                     /note="immune activating receptor Cd300d1-like;
                     CMRF35-like molecule 1; CMRF35-like molecule 5;
                     CMRF35-like molecule 3"
                     /codon_start=1
                     /product="uncharacterized protein LOC100361633 precursor"
                     /protein_id="NP_001395662.1"
                     /db_xref="GeneID:100361633"
                     /db_xref="RGD:2319739"
                     /translation="MWQFSALLFFLLPGCSTAQDPVTGPEEVSSQEQGSLIVQCQYAS
                     HWKDYRKYWCRGAEWSSCKILVETDASECLVKENRVSIRDDQRNFIFTVTMEDLRMSD
                     AGIYWCGIVKSGYDPMFKVRVGIEPGCSTAQDLLTGPKEVSSQEQGSLTVRCQYGSWW
                     KDYRKYWCRGAEWSSCKILVETDASECLVKKNRVSMRDNQTNFIFTVTMEDLRMSDAG
                     IYWCGITKAGYDPMFKVHVSIDPGSSPWCCTIPEPTTSSPVDPQPSMTTIDTIPAPSP
                     QPRSLLSSPYFCILLFLELPLFLCMLCAILWVNRPQTWSGRQGIWPYHESQ"
     exon            126..467
                     /gene="Cd300ld"
                     /gene_synonym="AABR07030771.1"
                     /inference="alignment:Splign:2.1.0"
     exon            468..809
                     /gene="Cd300ld"
                     /gene_synonym="AABR07030771.1"
                     /inference="alignment:Splign:2.1.0"
     exon            810..921
                     /gene="Cd300ld"
                     /gene_synonym="AABR07030771.1"
                     /inference="alignment:Splign:2.1.0"
     exon            922..1932
                     /gene="Cd300ld"
                     /gene_synonym="AABR07030771.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accgaaagga aattcaccct gagcttcaag tccttgccgg gtgctggcat ctgtcacctc
       61 caaggacagg agaggggacc acaccatgtg gcagttctct gctctgctct tcttcctcct
      121 cccaggctgc tccactgctc aggatccagt cacaggtcca gaggaggtga gcagtcagga
      181 gcagggctcc ctgatagtgc agtgccaata tgcctcacac tggaaggatt acaggaagta
      241 ctggtgccga ggagctgagt ggagttcctg taagattctt gttgaaaccg atgcatcaga
      301 gtgcttggtg aaggagaacc gtgtgtctat cagggacgac cagagaaact tcatcttcac
      361 agtgaccatg gaggacctga ggatgagcga tgctggcatt tactggtgtg gaattgtgaa
      421 atctggatat gatcccatgt ttaaagttcg tgtgggcatt gagccaggct gctccactgc
      481 tcaggattta ctcacaggac caaaggaggt gagcagtcag gagcagggct ccctgacagt
      541 gcggtgccaa tatggctcat ggtggaagga ttacaggaag tactggtgcc gaggagctga
      601 gtggagttcc tgtaagattc tcgttgaaac cgatgcatca gagtgcttgg tgaagaagaa
      661 ccgtgtgtcc atgagggaca accagacaaa cttcattttc acagtgacta tggaggacct
      721 gaggatgagc gatgctggca tttactggtg tggaattacg aaagctggat atgatcccat
      781 gtttaaagtt catgtgagca ttgacccagg ttcgagccct tggtgctgta caattccgga
      841 gcccaccaca tcctcaccgg ttgaccctca gcccagcatg accacaattg acacaattcc
      901 tgctcccagc ccacagcctc ggtctcttct gagcagtccc tacttctgca tcctgctgtt
      961 tctggagtta cccctgttcc tgtgcatgct ctgtgccatc ctgtgggtga acaggcctca
     1021 gacatggtct gggagacaag gcatttggcc ctatcatgag agccaatgaa gtctgttgac
     1081 atggagaccc tgtccctgga tgcatcactc tggtggccga ggataaccag taaacctgtg
     1141 ttcttgaaaa tgctctgaga ctttcagaag attctcagca cgtttcaaac acataaagaa
     1201 tgtgccctac atatactggc tggatagatg gctccgaggt taagagcacc ggctgctctt
     1261 ccagaggttc tgagttcaaa taccagtaac aacatggtgg ctcacaccca cctacaatag
     1321 gaactgatgc cctcttctgg tgcgcaggtg cacatgcaga caacactcat attaaataaa
     1381 ttaattataa ttaattaaat agacttatag tacagtacct ttacttgttt tttggtaagt
     1441 tcacacttgt gtacaacatg actctatcct gtccacctgc gtccccaccc tcccactccc
     1501 tcaggcctgt gttccctcct cccctccatg tctcctcccc cttctcccat ttctcttttt
     1561 cattttgtat ctcaccgaga acagttagtg cctcctgact gattgctagc tgaccttgct
     1621 gacttggact tggtcatgta accatggctg tagtgacctc aggatcagga gacaaagcca
     1681 cattcagaac tcagcatttc agggcactct cctcccctac ctctgcctgt ggaactcttt
     1741 cctctccctc tctgccttgg ggtgggatgg cggtgtcata tagagctgag cactcaatgg
     1801 tcacttacac cacagcagaa ggaagcatca ccaaccaagg acagggcagt gctcattaaa
     1861 gggtggagac gtagatattt cgaagacaat ttgagagctt ctccaataaa tatgtacact
     1921 ttccatgaga aa
//
