LOCUS       NM_001108849             915 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus CD209d molecule (Cd209d), mRNA.
ACCESSION   NM_001108849 XM_001064092 XM_344064
VERSION     NM_001108849.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Njiri OA, Zhang X, Zhang Y, Wu B, Jiang L, Li Q, Liu W and Chen T.
  TITLE     CD209 C-Type Lectins Promote Host Invasion, Dissemination, and
            Infection of Toxoplasma gondii
  JOURNAL   Front Immunol 11, 656 (2020)
   PUBMED   32391004
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Shiba M, Sugano Y, Ikeda Y, Okada H, Nagai T, Ishibashi-Ueda H,
            Yasuda S, Ogawa H and Anzai T.
  TITLE     Presence of increased inflammatory infiltrates accompanied by
            activated dendritic cells in the left atrium in rheumatic heart
            disease
  JOURNAL   PLoS One 13 (9), e0203756 (2018)
   PUBMED   30261069
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 915)
  AUTHORS   Zupin L, Polesello V, Alberi G, Moratelli G, Croce SL, Masutti F,
            Pozzato G, Crovella S and Segat L.
  TITLE     CD209 promoter polymorphisms associate with HCV infection and
            pegylated-interferon plus ribavirin treatment response
  JOURNAL   Mol Immunol 76, 49-54 (2016)
   PUBMED   27348632
REFERENCE   4  (bases 1 to 915)
  AUTHORS   Zhen A, Krutzik SR, Levin BR, Kasparian S, Zack JA and Kitchen SG.
  TITLE     CD4 ligation on human blood monocytes triggers macrophage
            differentiation and enhances HIV infection
  JOURNAL   J Virol 88 (17), 9934-9946 (2014)
   PUBMED   24942581
REFERENCE   5  (bases 1 to 915)
  AUTHORS   da Silva RC, Segat L, da Cruz HL, Schindler HC, Montenegro LM,
            Crovella S and Guimaraes RL.
  TITLE     Association of CD209 and CD209L polymorphisms with tuberculosis
            infection in a Northeastern Brazilian population
  JOURNAL   Mol Biol Rep 41 (8), 5449-5457 (2014)
   PUBMED   24874302
REFERENCE   6  (bases 1 to 915)
  AUTHORS   Guo Y, Atkinson CE, Taylor ME and Drickamer K.
  TITLE     All but the shortest polymorphic forms of the viral receptor
            DC-SIGNR assemble into stable homo- and heterotetramers
  JOURNAL   J Biol Chem 281 (24), 16794-16798 (2006)
   PUBMED   16621794
  REMARK    GeneRIF: most polymorphic forms of the viral receptor DC-SIGNR
            assemble into stable homo- and heterotetramers
REFERENCE   7  (bases 1 to 915)
  AUTHORS   Despres,P., Sakuntabhai,A. and Julier,C.
  TITLE     [A variant in the CD209 (DC-SIGN) promoter is associated with
            severity of dengue disease]
  JOURNAL   Med Sci (Paris) 21 (11), 905-906 (2005)
   PUBMED   16274635
REFERENCE   8  (bases 1 to 915)
  AUTHORS   Sakuntabhai A, Turbpaiboon C, Casademont I, Chuansumrit A, Lowhnoo
            T, Kajaste-Rudnitski A, Kalayanarooj SM, Tangnararatchakit K,
            Tangthawornchaikul N, Vasanawathana S, Chaiyaratana W,
            Yenchitsomanus PT, Suriyaphol P, Avirutnan P, Chokephaibulkit K,
            Matsuda F, Yoksan S, Jacob Y, Lathrop GM, Malasit P, Despres P and
            Julier C.
  TITLE     A variant in the CD209 promoter is associated with severity of
            dengue disease
  JOURNAL   Nat Genet 37 (5), 507-513 (2005)
   PUBMED   15838506
REFERENCE   9  (bases 1 to 915)
  AUTHORS   Schjetne KW, Thompson KM, Aarvak T, Fleckenstein B, Sollid LM and
            Bogen B.
  TITLE     A mouse C kappa-specific T cell clone indicates that DC-SIGN is an
            efficient target for antibody-mediated delivery of T cell epitopes
            for MHC class II presentation
  JOURNAL   Int Immunol 14 (12), 1423-1430 (2002)
   PUBMED   12456590
REFERENCE   10 (bases 1 to 915)
  AUTHORS   Ryan EJ, Marshall AJ, Magaletti D, Floyd H, Draves KE, Olson NE and
            Clark EA.
  TITLE     Dendritic cell-associated lectin-1: a novel dendritic
            cell-associated, C-type lectin-like molecule enhances T cell
            secretion of IL-4
  JOURNAL   J Immunol 169 (10), 5638-5648 (2002)
   PUBMED   12421943
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474084.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001064092.1, XM_344064.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132273, SAMEA5760383
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p12"
     gene            1..915
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /note="CD209d molecule"
                     /db_xref="GeneID:363856"
                     /db_xref="RGD:1561104"
     exon            1..125
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..793
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /note="DC-SIGN-related protein; C-type lectin domain
                     family 4, member M; CD209d antigen; CD209 molecule; CD209
                     molecule D"
                     /codon_start=1
                     /product="CD209d molecule"
                     /protein_id="NP_001102319.1"
                     /db_xref="GeneID:363856"
                     /db_xref="RGD:1561104"
                     /translation="MSESMESNTQQLDNPEDEEYLMSGSRYSIISSRLRTKFGIKSLA
                     EYTKQSHNPLVLPLLSFLFLAGLLLIILVLVSKVPSSEVQDKIYQELMQLKTEVHDGL
                     CQPCPRDWTFFNGSCYFFSKSQRNWHNSITACKELGAQLVIVETDEEQTFLQQTSKTR
                     GPTWMGLSDMHNEATWHWVDGSPLSPSFAQYWNRGEPNNVGDEDCAEFSGDGWNDLRC
                     DTRIFWICKKVSTSSCTIK"
     exon            126..212
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /inference="alignment:Splign:2.1.0"
     exon            213..302
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /inference="alignment:Splign:2.1.0"
     exon            303..377
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /inference="alignment:Splign:2.1.0"
     exon            378..529
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /inference="alignment:Splign:2.1.0"
     exon            530..639
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /inference="alignment:Splign:2.1.0"
     exon            640..915
                     /gene="Cd209d"
                     /gene_synonym="Cd209; Clec4m; Dc-signr; RGD1561104"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaatgtcta gaaagtgggt ataaggggac aacaaaaact ggtctctcac agacccgggc
       61 actagcaata gcagtaacca tgagtgagtc catggaatca aacacacagc aactggacaa
      121 tccagaggat gaagagtatt tgatgagtgg ttccaggtat tctattatca gctctcgatt
      181 acgaacaaaa tttggaatca aaagtttggc agaatatacg aagcagagcc acaacccctt
      241 ggtcctaccg ctgctctcct tcctgttctt ggctggcctt ctgctgatca ttcttgtcct
      301 agtctcaaag gtacccagct cagaagttca ggacaaaatc taccaggagc tcatgcaact
      361 gaagactgaa gtccatgatg gcttgtgtca accctgtccg agggattgga cattcttcaa
      421 tggaagctgt tacttcttct ccaagtccca aagaaactgg cacaactcca tcactgcctg
      481 caaggaactg ggggctcaat tggtcatcgt agagacggat gaagagcaga ccttcctgca
      541 gcagacttct aagactaggg gaccaacatg gatgggtctc tcagacatgc ataatgaagc
      601 cacgtggcac tgggtggatg gctcacctct gtcacccagc tttgcacagt attggaatag
      661 aggggagccc aacaatgtcg gtgatgagga ttgtgcagag ttctctgggg acggctggaa
      721 tgacctcaga tgcgataccc ggattttctg gatctgtaag aaagtttcaa cctcatcatg
      781 taccatcaaa tgaaagacct cttctcagcc tctccattcc caactatgcc aagtggatga
      841 acctgactcg tgtccatgct ccttctcctg gtcttttgag attaggatgc taataaaagc
      901 acccattttt ctgtc
//
