LOCUS       NM_017079               1835 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Rattus norvegicus CD1d1 molecule (Cd1d1), mRNA.
ACCESSION   NM_017079
VERSION     NM_017079.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Lei,Z., Tang,R., Qi,Q., Gu,P., Wang,J., Xu,L., Wei,C., Pu,Y.,
            Qi,X., Chen,Y., Yu,B., Yu,Y., Chen,X., Zhu,J., Li,Y., Zhou,S. and
            Su,C.
  TITLE     Hepatocyte CD1d protects against liver immunopathology in mice with
            schistosomiasis japonica
  JOURNAL   Immunology 162 (3), 328-338 (2021)
   PUBMED   33283278
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Rey-Jurado,E., Bohmwald,K., Galvez,N.M.S., Becerra,D.,
            Porcelli,S.A., Carreno,L.J. and Kalergis,A.M.
  TITLE     Contribution of NKT cells to the immune response and pathogenesis
            triggered by respiratory viruses
  JOURNAL   Virulence 11 (1), 580-593 (2020)
   PUBMED   32463330
REFERENCE   3  (bases 1 to 1835)
  AUTHORS   Kim,E.Y., Ner-Gaon,H., Varon,J., Cullen,A.M., Guo,J., Choi,J.,
            Barragan-Bradford,D., Higuera,A., Pinilla-Vera,M., Short,S.A.,
            Arciniegas-Rubio,A., Tamura,T., Leaf,D.E., Baron,R.M., Shay,T. and
            Brenner,M.B.
  TITLE     Post-sepsis immunosuppression depends on NKT cell regulation of
            mTOR/IFN-gamma in NK cells
  JOURNAL   J Clin Invest 130 (6), 3238-3252 (2020)
   PUBMED   32154791
REFERENCE   4  (bases 1 to 1835)
  AUTHORS   Raynor,J., Lin,A., Hummel,S.A., Lampe,K., Jordan,M., Hoebe,K. and
            Hildeman,D.A.
  TITLE     The Variable Genomic NK Cell Receptor Locus Is a Key Determinant of
            CD4+ T Cell Responses During Viral Infection
  JOURNAL   Front Immunol 11, 197 (2020)
   PUBMED   32153566
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1835)
  AUTHORS   Taheri,M., Danesh,H., Bizhani,F., Bahari,G., Naderi,M. and
            Hashemi,M.
  TITLE     Association between genetic variants in CD1A and CD1D genes and
            pulmonary tuberculosis in an Iranian population
  JOURNAL   Biomed Rep 10 (4), 259-265 (2019)
   PUBMED   30972222
REFERENCE   6  (bases 1 to 1835)
  AUTHORS   Katabami,S., Matsuura,A., Chen,H.Z., Imai,K. and Kikuchi,K.
  TITLE     Structural organization of rat CD1 typifies evolutionarily
            conserved CD1D class genes
  JOURNAL   Immunogenetics 48 (1), 22-31 (1998)
   PUBMED   9601940
  REMARK    Erratum:[Immunogenetics 1999 Oct;50(1-2):114]
REFERENCE   7  (bases 1 to 1835)
  AUTHORS   Mendiratta,S.K., Martin,W.D., Hong,S., Boesteanu,A., Joyce,S. and
            Van Kaer,L.
  TITLE     CD1d1 mutant mice are deficient in natural T cells that promptly
            produce IL-4
  JOURNAL   Immunity 6 (4), 469-477 (1997)
   PUBMED   9133426
REFERENCE   8  (bases 1 to 1835)
  AUTHORS   Matsuura,A., Kinebuchi,M., Chen,H., Yamada,K., Yoshida,M.C.,
            Horie,M. and Kikuchi,K.
  TITLE     Assignment of the evolutionarily conserved CD1D class gene (Cd1d)
            to rat chromosome 7q32
  JOURNAL   Cytogenet Cell Genet 79 (3-4), 235-236 (1997)
   PUBMED   9605862
REFERENCE   9  (bases 1 to 1835)
  AUTHORS   Bendelac,A., Lantz,O., Quimby,M.E., Yewdell,J.W., Bennink,J.R. and
            Brutkiewicz,R.R.
  TITLE     CD1 recognition by mouse NK1+ T lymphocytes
  JOURNAL   Science 268 (5212), 863-865 (1995)
   PUBMED   7538697
REFERENCE   10 (bases 1 to 1835)
  AUTHORS   Ichimiya,S., Kikuchi,K. and Matsuura,A.
  TITLE     Structural analysis of the rat homologue of CD1. Evidence for
            evolutionary conservation of the CD1D class and widespread
            transcription by rat cells
  JOURNAL   J Immunol 153 (3), 1112-1123 (1994)
   PUBMED   7517972
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from D26439.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: D26439.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760494, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1835
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /note="CD1d1 molecule"
                     /db_xref="GeneID:25109"
                     /db_xref="RGD:2296"
     exon            1..158
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..1108
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /note="T-cell surface glycoprotein CD1d;
                     antigen-presenting glycoprotein CD1d; CD1d1 antigen; CD1D
                     antigen"
                     /codon_start=1
                     /product="antigen-presenting glycoprotein CD1d precursor"
                     /protein_id="NP_058775.1"
                     /db_xref="GeneID:25109"
                     /db_xref="RGD:2296"
                     /translation="MLYLPCLLLWAFPQFWGQSEVQQNYTFGCLQISSFANRSWSRTD
                     SVVWLGDLQTHRWSNDSDTISFTKPWSQGKFSNQQWEKLQHMFQVYRTSFTRDIKEIV
                     KMMSPKEDYPIEVQLSAGCEMYPGNASESFLHVAFQGEYVVRFHGTSWQKVPEAPSWL
                     DLPIKMLNADEGTRETVQILLNDTCPQFVRGLLEAGKPDLEKQEKPVAWLSRGPNPAH
                     GHLQLVCHVSGFHPKPVWVMWMRGDQEQGGTHRGDILPNADETWYLQATLDVEAGDEA
                     GLACRVKHSSLEGQDIILYWGGRQVSPVLIFLIVGVLVLVVCAVAYYIIRKRRRSYQD
                     IM"
     exon            159..428
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /inference="alignment:Splign:2.1.0"
     exon            429..707
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /inference="alignment:Splign:2.1.0"
     exon            708..986
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1086
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1835
                     /gene="Cd1d1"
                     /gene_synonym="Cd1; Cd1d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtaggctca gtgcctaaaa gccacagagc cccatcaggc ggggagcagg gtaaagtgca
       61 gaagtcggag cccagggctg tgtagaccgc cggcactatg ctgtacctac cgtgcctgtt
      121 gctgtgggca ttcccacagt tctggggaca atccgaagtc cagcagaatt acaccttcgg
      181 ctgcctgcag atctcttcct tcgccaaccg aagctggtcc cgcacagaca gtgtggtctg
      241 gctgggggat ctgcagacac accgttggag taatgactca gacaccatca gcttcacaaa
      301 gccgtggtcc cagggcaaat tcagtaacca gcagtgggag aagttgcagc atatgtttca
      361 agtgtatcga accagcttta ccagggacat caaggaaata gtcaaaatga tgtcacctaa
      421 agaagactat cctatcgagg tccaactgtc tgctggctgt gaaatgtacc ctgggaatgc
      481 ttcagaaagc tttttacacg tagcatttca aggagaatat gtcgtgagat tccatggaac
      541 atcctggcag aaggtcccag aggccccatc ttggttagat ttgcccatca aaatgctcaa
      601 cgctgatgaa ggaacgagag aaacagtgca gatactcctg aacgacacct gcccccagtt
      661 tgtccgtggc ctcctagaag cagggaagcc agacctagaa aagcaagaga agccagtggc
      721 ctggttatcc cgtggcccca accctgccca tggccatctg cagctggtat gtcatgtctc
      781 tggcttccac ccaaagcctg tgtgggtgat gtggatgcgg ggtgaccagg agcaaggggg
      841 tactcacaga ggtgacatcc tgccaaatgc ggatgagaca tggtatcttc aagcaaccct
      901 ggatgtggag gctggagacg aggctggcct ggcctgcagg gtgaagcaca gcagtctaga
      961 ggggcaggac atcatcctct actggggtgg cagacaagta tccccggtgt tgatcttctt
     1021 gatagtaggc gtactggttc tagtggtgtg tgctgtggcc tactatatca tcaggaaaag
     1081 gagacgctcc tatcaagaca tcatgtgaga tttttacccc tgcctctcct gaagttcaga
     1141 ccttccaggt tctaggactt cagtccttgt ctgctcagaa actgaggata aaaaagagga
     1201 atcctgaaga aatgaagagc aaccagtaca cccttttaat attaattata agaaatcaat
     1261 tatttaaatg atttttataa gcttgggtag ttcagaacaa acacaactgc acatgtgtgt
     1321 acctgccaga aacaagctgt gagcagtgtc tcgtgggatt tgtactgaac tagacagcac
     1381 gcttcctgcc caaacagaca ctttgggggt tgttggcaag tgtaaagtcc aacaccaaca
     1441 cgactgtact ctgtattttt caagataacg agaaaaatgg atttgtgtgt gtgtgtgtga
     1501 catatagctt tggggtttgt tggcaagtat aaagtccaac accaacacga ctgtactctg
     1561 tatttttcaa gataactaga aaaatagatt ttgtgtgtgt gtgtgtgtga tacaagtatt
     1621 ttaaaaagta aactcaaata tttacaaatg attactacct taaatacaaa gctgctgact
     1681 gatgattacc ccaaaggctt cttccagtgt gtggtctttt tacaatgttt gttctaattg
     1741 tcataatggc cactttaggg cacagtctcc attgaaaatg tgcattaatg actgaaaggt
     1801 ggtttctctt taaaataaaa ttaggatgta cgatg
//
