LOCUS       NM_001271259             854 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus CD164 molecule like 2 (Cd164l2), mRNA.
ACCESSION   NM_001271259 XM_002726634 XM_002729547
VERSION     NM_001271259.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 854)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Sep 12, 2012 this sequence version replaced
            XM_002726634.1, XM_002729547.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.30638.1,
                                           SRR26360181.863487.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-129               JAXUCZ010000005.1  150707794-150707922
            130-291             JAXUCZ010000005.1  150708318-150708479
            292-363             JAXUCZ010000005.1  150708577-150708648
            364-408             JAXUCZ010000005.1  150709068-150709112
            409-553             JAXUCZ010000005.1  150710658-150710802
            554-854             JAXUCZ010000005.1  150711322-150711622
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..854
                     /gene="Cd164l2"
                     /note="CD164 molecule like 2"
                     /db_xref="GeneID:100359977"
                     /db_xref="RGD:2323068"
     exon            1..129
                     /gene="Cd164l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..560
                     /gene="Cd164l2"
                     /note="sialomucin core protein 24-like; CD164
                     sialomucin-like 2"
                     /codon_start=1
                     /product="CD164 sialomucin-like 2 protein precursor"
                     /protein_id="NP_001258188.1"
                     /db_xref="GeneID:100359977"
                     /db_xref="RGD:2323068"
                     /translation="MAAPGPRALRAALCGGCCCLLLCAQLVLAGKGARGFGRGALLHL
                     NIWPAAHGGCKHLGHCERCVDRAHNSSICVWQQCGPEEPGHCVAHTEVVKEGCSVYNH
                     SESCPASHHHSTEEPKTSTTGSPPIPEDHSPGFDGASFIGGIVLVLSLQATAFFVLRF
                     LKAKDSTYQTLI"
     exon            130..291
                     /gene="Cd164l2"
                     /inference="alignment:Splign:2.1.0"
     exon            292..363
                     /gene="Cd164l2"
                     /inference="alignment:Splign:2.1.0"
     exon            364..408
                     /gene="Cd164l2"
                     /inference="alignment:Splign:2.1.0"
     exon            409..553
                     /gene="Cd164l2"
                     /inference="alignment:Splign:2.1.0"
     exon            554..854
                     /gene="Cd164l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccccagctgt ccgccgaccc ccagtcccgg cccccgcgcc catggccgca cccggacccc
       61 gcgccttgcg tgctgcactc tgcggcggtt gttgttgcct cctcctgtgt gcccagctgg
      121 ttctagctgg taaaggagct cgtggctttg ggcggggagc cctgctccac ctgaacatct
      181 ggcctgctgc ccatgggggc tgcaaacact tgggacactg tgaacgctgt gtggacagag
      241 cccacaactc ctccatttgt gtctggcaac aatgtggacc agaggagcca ggacactgtg
      301 tggcccacac tgaggtggtc aaggagggtt gctctgtcta taaccactca gagtcatgcc
      361 cagcttccca ccatcattcc accgaggaac cgaagacaag tacgacaggg agtcccccca
      421 tccctgaaga ccacagccca ggttttgatg gagccagctt tatcgggggc attgtgctgg
      481 tactgagcct gcaggcgaca gctttctttg tgctacgctt cctcaaggcc aaggacagca
      541 cttaccagac gctaatctga ccccagtggt cctggctcca ccttgaaagg acagaggact
      601 cagaggctac cctcttggtt gccttatggg cactgggggt gggacaaact ttggccacca
      661 gtttctggtt cctgtaggca cagggcatca agcaggttta gcgctgatga ctgactgaca
      721 tgtcctctcc tgggcctggc acctgcagct gaaagcctcc ttcaaccacc tcacgactca
      781 tccagaagct gctgcctctt cccaccaacc cactctgggg tctaccctca aataaaggac
      841 acgtttccac ccca
//
