LOCUS       XM_039103937             735 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CD160 molecule (Cd160), mRNA.
ACCESSION   XM_039103937
VERSION     XM_039103937.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103937.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 27% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..735
                     /gene="Cd160"
                     /note="CD160 molecule; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 36%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:502585"
                     /db_xref="RGD:1563598"
     CDS             1..735
                     /gene="Cd160"
                     /codon_start=1
                     /product="CD160 antigen"
                     /protein_id="XP_038959865.1"
                     /db_xref="GeneID:502585"
                     /db_xref="RGD:1563598"
                     /translation="MASLPIGMLTGTCNRHVWEAYEGEHESEARGCAATDQQSQHLRE
                     IPAADKNMQILMAPGQSCCALAILLAIVNFQHGGCIHISSSASQKGGRLDFTCTLQYK
                     KDEAEGLILFWCKDRSWNCSPETSLEQLKVKRDPGTDGVIEKSSQLVFTIEQATPSDS
                     GTYQCCARSQKPEIYIHDHFLSVLVTENHTEIRQRKRSHPDFSHMNGTLSSGFLQVKA
                     WGMLVSSLVAFQGCHQKVEARLTQKV"
ORIGIN      
        1 atggcctcgc ttccaatagg catgttgaca ggcacttgta accgccacgt gtgggaggct
       61 tatgaggggg agcatgagtc tgaggccaga gggtgtgcag ccacagacca gcaaagtcaa
      121 catctacgtg aaattcctgc ggctgacaaa aacatgcaaa tcctgatggc acctggccaa
      181 agctgctgtg ccctggctat cctgctggca attgtgaact tccaacatgg tggatgtatt
      241 catatcagca gctcagcatc ccagaaagga gggcgactgg acttcacctg tactttgcag
      301 tacaagaaag atgaagctga ggggctaatt ctcttctggt gcaaagacag atcttggaac
      361 tgttcccctg agaccagctt ggaacagcta aaggttaaaa gggatcctgg gacagacggt
      421 gtcattgaaa agtcatctca gttggtgttt acaatagaac aagccacacc atcagacagt
      481 gggacctacc agtgttgtgc cagaagccag aagccagaaa tctacattca tgaccatttt
      541 ctctctgttc ttgtcacaga gaaccacacg gaaataagac agaggaaaag gtcacaccct
      601 gacttcagcc atatgaatgg cactctcagt tcaggcttcc tgcaagtaaa ggcttggggg
      661 atgctggtct ccagcctggt ggcctttcaa ggctgccacc agaaggtgga ggccagatta
      721 acccagaagg tgtaa
//
