LOCUS       NM_001271217            3122 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CD101 molecule (Cd101), mRNA.
ACCESSION   NM_001271217 XM_227554
VERSION     NM_001271217.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Rainbow,D.B., Moule,C., Fraser,H.I., Clark,J., Howlett,S.K.,
            Burren,O., Christensen,M., Moody,V., Steward,C.A., Mohammed,J.P.,
            Fusakio,M.E., Masteller,E.L., Finger,E.B., Houchins,J.P., Naf,D.,
            Koentgen,F., Ridgway,W.M., Todd,J.A., Bluestone,J.A.,
            Peterson,L.B., Mattner,J. and Wicker,L.S.
  TITLE     Evidence that Cd101 is an autoimmune diabetes gene in nonobese
            diabetic mice
  JOURNAL   J Immunol 187 (1), 325-336 (2011)
   PUBMED   21613616
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Sep 8, 2012 this sequence version replaced XM_227554.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR23984936.1379176.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760400 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               JAXUCZ010000002.1  191148039-191148149 c
            112-492             JAXUCZ010000002.1  191138555-191138935 c
            493-909             JAXUCZ010000002.1  191136950-191137366 c
            910-1296            JAXUCZ010000002.1  191135244-191135630 c
            1297-1674           JAXUCZ010000002.1  191131393-191131770 c
            1675-2079           JAXUCZ010000002.1  191130225-191130629 c
            2080-2490           JAXUCZ010000002.1  191126072-191126482 c
            2491-2892           JAXUCZ010000002.1  191121719-191122120 c
            2893-3122           JAXUCZ010000002.1  191111638-191111867 c
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..3122
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /note="CD101 molecule"
                     /db_xref="GeneID:310727"
                     /db_xref="RGD:1311453"
     exon            1..111
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..3122
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /note="immunoglobulin superfamily, member 2"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 2 precursor"
                     /protein_id="NP_001258146.1"
                     /db_xref="GeneID:310727"
                     /db_xref="RGD:1311453"
                     /translation="MASILCVASLFLCLTKLSISQREVKIQEGPLYRTEGYPVSISCN
                     VSGHRGPSTQDFQWSIYLPSAPTQEVQIISSKDAGFSYTMYARRVQSKEIYVERLRGN
                     SVLLRFSKLQMKDTGEYECHTPNTDGKYFGSYSAKTYLTVIPDTLSATMPSQTLGKKE
                     GEPLELTCEVTKATTQHTHLSLTWYLTQEGGGSHATEIISLSKDFILTPGPSYTDRFV
                     AGDVRLDKLGATFFKLSIGKLQLSDQGHVFCEATEWIQDPDEAWTLITRKQTDQTALK
                     IQPTARDFEVSITASSSPDEGKPLELVCLAVGRGGDPQLQGTWFLDGKEIAQIDARGI
                     LDLKRDYRDRASQGQLQVSKLSAQTFSLKIFSVGPEDVGAYTCEVAEVVRTQTASWQV
                     LQRKQSVGHPVQLREPAARSVTVSAEQRAVWEGETVTLLCKAAGDAAALSVSWWLTPQ
                     DQTTPVFVAGMGQDGIVQPGVSSPGPGYHGNRRLEKVDWATFRLEIASATVTDSGTYE
                     CRVSERPQNQAKDLQSTQKISVTVKSLKSSLRVNLMSRQPQVMLAHTFDLSCIVRANY
                     SDLKLPFSVMWQFQPAGSGAFHQLIRVTHDGRVEWGDTLPQLHRKTKVSQSFFRSQLQ
                     IHDAAMEETGVYRCEVEVYDRNSVCTSGPARVSATSNLLMITVTFPESKLRVNSSSQV
                     QELTISSSTQIECAILSRSAGNLPLSIIWYFSPISTNASHLKILEMDQTNVVKYGDEF
                     QTPRSKQKFYSEKVSQDLFLLNILSMEDSDQGCYHCAVEEWLLSTNGTWQKLERKTSG
                     LTELKLRPTGSQVHVSKVSWKGNATEYGEAGFSCSLDGPGSTSSLYSVTWYWSKGTAV
                     DGSQMLVHLQYDGLLQYGQEGSRKLLDCYRSSSTDFVLKLHRVEMEDAGIYWCRVAEW
                     QQYGHPGKWINQASDESQRMVLRVLRSESTFSSRICSSGPLLHFLVVCPFLMLLLLFT
                     SCLCLYWKARKLSDLSLSSKKEKALWVGMRRTSLQKEGGEEGEGY"
     exon            112..492
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     exon            493..909
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1296
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1674
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1675..2079
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2080..2490
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2491..2892
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2893..3122
                     /gene="Cd101"
                     /gene_synonym="Igsf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accgagtttt gtcactcagc ttctgagcaa gttcagtgac actgcctgga aagactgtgc
       61 cggtgcagat ggcaagcatc ctgtgtgtgg catctctctt tctctgtcta actaagctca
      121 gcatcagcca gagggaagtg aaaatacaag aaggacctct gtacagaacc gaaggttacc
      181 ctgtcagcat cagttgcaac gtaagtggtc atcggggtcc ttctacacag gatttccagt
      241 ggtctattta cctgccaagt gccccgaccc aagaagtcca gatcatcagt tccaaggatg
      301 ccggcttctc ttacaccatg tatgcccgga gggtgcagag caaggagatc tatgtagaga
      361 ggctgcgggg caactcggtc ctgctgcgtt tctcgaaact ccagatgaag gatactggcg
      421 agtatgagtg ccacacaccc aacacggacg gaaagtactt tggaagttac agtgcaaaga
      481 catatctaac tgtgattccc gacaccctgt ctgccaccat gccctcccag acactcggta
      541 agaaggaagg cgagccgttg gaactcacct gcgaggtgac caaagccacg actcaacata
      601 cccatctctc cctcacctgg tacctgacgc aggaaggagg agggagccac gccaccgaga
      661 tcatttctct ctccaaggat tttatattga cccctgggcc ctcctacaca gacagatttg
      721 tggccggcga tgtacggctg gacaagcttg gagccacttt cttcaaactg tccataggca
      781 agctccagct ctcagatcaa ggccatgtgt tctgcgaggc cacagagtgg attcaggatc
      841 cagatgaagc atggactttg atcacaagaa agcagacaga tcaaacagct ctgaagatcc
      901 agccaacagc aagagatttt gaagtgagca tcacggccag cagctcccct gatgaaggga
      961 aacccttgga actggtctgc ctggctgtcg gcagaggagg tgacccacag cttcagggta
     1021 cttggttcct cgatgggaag gaaattgccc agattgatgc tcgcgggatc ctggatctga
     1081 agagagacta cagagacaga gcaagccaag gacagctgca ggtttcaaag ttaagtgccc
     1141 agactttctc tctcaagatc ttctccgtgg gtccggagga cgtaggcgcc tacacttgtg
     1201 aagtggcaga ggtggtgagg actcagacag cctcctggca ggtacttcag agaaagcagt
     1261 cagtaggcca cccagtgcag ctgagggagc cggcagcaag aagtgtgacc gtgtctgcag
     1321 agcagcgtgc cgtgtgggaa ggagagacag tcacccttct ctgcaaggca gctggagatg
     1381 cagctgctct gtctgtcagt tggtggctca ccccacagga ccagaccaca cccgtgtttg
     1441 tggctggcat ggggcaagat ggtattgtgc agccaggagt ctcttctccc ggccctgggt
     1501 accatggtaa caggaggttg gagaaagtgg actgggccac ctttcggctg gagattgctt
     1561 ctgccacggt cacagacagc ggtacttatg aatgcagagt gtcagagaga ccccagaacc
     1621 aggccaaaga tttgcagtca acccagaaga tttcagtcac agtaaaatct ctgaaatcaa
     1681 gtttgcgagt taatctgatg agccggcagc cacaagtgat gttagcccat accttcgacc
     1741 tgtcttgtat agtgagggcc aactactcgg atctcaagct gccattctcc gtgatgtggc
     1801 agttccagcc agctggctct ggagccttcc atcagcttat tcgagtcacc catgatggcc
     1861 gagttgaatg gggggacacc ctcccccagc tccacaggaa gacgaaggtg tcacagtctt
     1921 tctttcgttc tcaactccaa atccacgatg ctgccatgga ggagacaggg gtgtatcggt
     1981 gcgaagtgga ggtttatgac agaaattccg tgtgcacaag tggcccggcc agggtgtctg
     2041 ccacctctaa cctattaatg attacagtca cctttccaga gagcaaactg agagtgaact
     2101 cgagcagtca ggtccaagag ctaaccatca gctccagcac tcaaatagaa tgtgccatct
     2161 tgtcccgatc tgctggaaac cttccgttat ccatcatttg gtacttctct cccatttcta
     2221 caaatgcatc ccacttgaaa atcctagaaa tggaccaaac caatgttgta aaatatgggg
     2281 atgaatttca aacccctcgg agcaagcaaa aattttattc cgagaaagtt tcccaagact
     2341 tatttctgct gaacattctg agcatggagg acagtgacca gggctgctac cactgtgctg
     2401 tagaggaatg gctcttgtct acaaatggca cttggcaaaa gcttgaaagg aagacttcag
     2461 gactcacaga attgaaactc aggcccacag gaagtcaggt ccatgtctcc aaagtaagct
     2521 ggaagggaaa tgctacagag tatggagagg cgggcttcag ctgcagcctg gacggccctg
     2581 gtagcacatc ctccctgtac tctgtgactt ggtactggag caaaggaacc gctgtggacg
     2641 ggagtcaaat gctggtgcac ctgcagtatg acggcttgct gcagtatggc caagagggga
     2701 gcaggaagct cctggactgc taccgatcct cttccacaga ttttgtcctg aagctgcatc
     2761 gggtggaaat ggaggatgct gggatatatt ggtgcagggt ggctgagtgg cagcaatatg
     2821 gccacccagg caagtggatc aaccaagcct cagatgaatc acaacgaatg gtactccggg
     2881 tgctgcgctc agagtccacg ttctcttccc ggatctgctc ctctggaccc ttactccact
     2941 tcctcgtcgt ctgccccttc ctcatgttgc tccttctatt cacgtcctgc ctctgcttgt
     3001 actggaaggc caggaagttg tcagacctga gtctcagttc gaagaaagaa aaggctcttt
     3061 gggtgggcat gaggaggaca tcacttcaga aggaaggagg agaggagggt gaaggctact
     3121 ga
//
