LOCUS       NM_001191833            1456 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus cyclin Y (Ccny), mRNA.
ACCESSION   NM_001191833 XM_341545
VERSION     NM_001191833.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Joe,I.S., Kim,J.H., Kim,H., Hong,J.H., Kim,M. and Park,M.
  TITLE     Cyclin Y-mediated transcript profiling reveals several important
            functional pathways regulated by Cyclin Y in hippocampal neurons
  JOURNAL   PLoS One 12 (2), e0172547 (2017)
   PUBMED   28241067
  REMARK    GeneRIF: CCNY may be involved in hippocampal neuronal system
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  AUTHORS   Cho,E., Kim,D.H., Hur,Y.N., Whitcomb,D.J., Regan,P., Hong,J.H.,
            Kim,H., Ho Suh,Y., Cho,K. and Park,M.
  TITLE     Cyclin Y inhibits plasticity-induced AMPA receptor exocytosis and
            LTP
  JOURNAL   Sci Rep 5, 12624 (2015)
   PUBMED   26220330
  REMARK    GeneRIF: Data show that cyclin Y (CCNY) negatively regulates
            long-term potentiation (LTP) of synaptic strength through
            inhibition of AMPA receptor trafficking.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1456)
  AUTHORS   Davidson,G., Shen,J., Huang,Y.L., Su,Y., Karaulanov,E.,
            Bartscherer,K., Hassler,C., Stannek,P., Boutros,M. and Niehrs,C.
  TITLE     Cell cycle control of wnt receptor activation
  JOURNAL   Dev Cell 17 (6), 788-799 (2009)
   PUBMED   20059949
REFERENCE   4  (bases 1 to 1456)
  AUTHORS   Jiang,M., Gao,Y., Yang,T., Zhu,X. and Chen,J.
  TITLE     Cyclin Y, a novel membrane-associated cyclin, interacts with PFTK1
  JOURNAL   FEBS Lett 583 (13), 2171-2178 (2009)
   PUBMED   19524571
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jul 17, 2010 this sequence version replaced XM_341545.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.58123.1,
                                           SRR26643293.72411.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-154               JAXUCZ010000017.1  62207627-62207780   c
            155-229             JAXUCZ010000017.1  62145229-62145303   c
            230-264             JAXUCZ010000017.1  62136387-62136421   c
            265-365             JAXUCZ010000017.1  62123391-62123491   c
            366-401             JAXUCZ010000017.1  62119770-62119805   c
            402-459             JAXUCZ010000017.1  62113773-62113830   c
            460-579             JAXUCZ010000017.1  62113562-62113681   c
            580-746             JAXUCZ010000017.1  62106110-62106276   c
            747-909             JAXUCZ010000017.1  62083169-62083331   c
            910-1456            JAXUCZ010000017.1  62079925-62080471   c
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.1"
     gene            1..1456
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /note="cyclin Y"
                     /db_xref="GeneID:361261"
                     /db_xref="RGD:1565969"
     CDS             1..1026
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /codon_start=1
                     /product="cyclin-Y"
                     /protein_id="NP_001178762.1"
                     /db_xref="GeneID:361261"
                     /db_xref="RGD:1565969"
                     /translation="MGNTTSCCVSSSPKLRRNAHSRLESYRPDTDLSREDTGCNLQHI
                     SDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSLFINHHPPGQTSRKYSSCS
                     TIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPD
                     YDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLG
                     AILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYF
                     DLRSLAEANSLSFPLEPLSRERAHKLEAISRLCEDKYKDLRKPMRKRSASADNLILPR
                     WSPAIIS"
     exon            1..154
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            155..229
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            230..264
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            265..365
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            366..401
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            402..459
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            460..579
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            580..746
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            747..909
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1456
                     /gene="Ccny"
                     /gene_synonym="RGD1565969"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggggaaca caacttcgtg ctgcgtgtcg tccagcccta agctccggag gaatgcgcac
       61 tcgcggctgg agtcctaccg cccggacacg gacctcagcc gcgaggacac tggctgcaat
      121 ctgcagcaca tcagcgaccg ggaaaacatc gacgatttaa acatggaatt caatccttca
      181 gaccatcctc gggccagcac aatattcctc agcaaatctc agacagacgt gagagaaaaa
      241 cgaaagagtc tcttcattaa ccatcatcct ccagggcaga catcaaggaa atacagttcc
      301 tgctccacca tctttctaga cgacagcaca gtcagccagc caaacctcaa gtacaccatc
      361 aaatgtgtag ctcttgcgat atattaccac atcaaaaaca gggacccaga tggaaggatg
      421 ctcttagata tttttgatga aaacctccac cctctttcga aatccgaagt gccaccagat
      481 tatgacaaac acaacccaga gcagaagcag atttaccggt tcgttcggac actgttcagt
      541 gctgctcagc tgacagctga atgtgccatt gtcaccctgg tataccttga aaggctcttg
      601 acatatgcag agattgacat ttgtccagcc aattggaagc gcattgttct aggagctatc
      661 ctgctggcct ctaaggtgtg ggatgaccag gctgtgtgga atgtggacta ctgccagatc
      721 ctgaaagaca tcacagtgga ggacatgaat gaactggaac gccagttcct tgaattgcta
      781 cagtttaaca tcaatgttcc ttccagtgtg tatgccaagt attattttga tctgcgttct
      841 ctggcagaag caaacagcct gagctttcct ctggagcccc tgagcaggga gcgtgcccac
      901 aagctggagg ccatctctcg tctctgtgag gacaagtaca aggacctcag aaaacccatg
      961 aggaagcgtt cagcaagtgc tgacaacctg attctgcctc ggtggtcccc agccatcatc
     1021 tcctaactgg ggcactctcc tgaggccatg ccgtccctca tcttctcctt ttgtttaaga
     1081 aaagatgaac ttggatggtt tggtttggtt tggttttctt ttttccttct gtttttaacg
     1141 cagccccgtc aaggctgcct tcacacccac ctccacgttg cgtgggtgta cacaaagagg
     1201 ctttaaggga cgtaaaatca gtattcagga aactcggtgt caagccttcg cagcagtcac
     1261 caacagcgct tctttcatgg aggaaacaga ctctaatcct ggagaaggaa atgaaggaaa
     1321 aggaagttgt gttgaggcaa agattagttg ggagctttgc tgtttctggg tttctgtctg
     1381 gtcatagaca ccagatggag gcagatggta ggtagcagag ttgaaggcac ctccaaatcc
     1441 ggaatgccat gctatg
//
