LOCUS       NM_001037773            2990 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus cyclin J-like (Ccnjl), mRNA.
ACCESSION   NM_001037773 XM_220317
VERSION     NM_001037773.5
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Feb 3, 2021 this sequence version replaced NM_001037773.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.40202.1,
                                           SRR26643429.36077.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                JAXUCZ010000010.1  28497757-28497819
            64-277              JAXUCZ010000010.1  28525345-28525558
            278-580             JAXUCZ010000010.1  28547984-28548286
            581-740             JAXUCZ010000010.1  28550679-28550838
            741-2990            JAXUCZ010000010.1  28552628-28554877
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q21"
     gene            1..2990
                     /gene="Ccnjl"
                     /note="cyclin J-like"
                     /db_xref="GeneID:303059"
                     /db_xref="RGD:1561384"
     CDS             1..1164
                     /gene="Ccnjl"
                     /codon_start=1
                     /product="cyclin-J-like protein"
                     /protein_id="NP_001032862.2"
                     /db_xref="GeneID:303059"
                     /db_xref="RGD:1561384"
                     /translation="MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDI
                     LTLLSRHCHLCPSARHLAIYLLDHFMDQYNVTTSKQLYTVAVSCLLLASKFEDREDRV
                     PKLDQINSTRILSSHNFSLTKKELLTTELLLLEAFSWDLCLPTPAHFLDYYLLASISQ
                     KDHHCHTWPTTCLRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQ
                     LSPYWTRDLQRVSNYSLEHLSTCIEILLVAYDNVLKDAVAVKSQALAMVPSSSSAPTQ
                     VLFQPPTYPSLSQPPPTTLAQFQSPAQDLCLAYRDSLQAHRSGTLLSGDTGPSLHTPY
                     PTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHMFPTGCFDS"
     exon            1..63
                     /gene="Ccnjl"
                     /inference="alignment:Splign:2.1.0"
     exon            64..277
                     /gene="Ccnjl"
                     /inference="alignment:Splign:2.1.0"
     exon            278..580
                     /gene="Ccnjl"
                     /inference="alignment:Splign:2.1.0"
     exon            581..740
                     /gene="Ccnjl"
                     /inference="alignment:Splign:2.1.0"
     exon            741..2990
                     /gene="Ccnjl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggatgagc cgtggtggga agggcgggtc gcctcggacg tccactgcac tctgcgcgag
       61 aaggaactga agctgcccac cttccgtgcc cactccccgc tcctgaagag ccggcggttc
      121 tttgtagaca ttctgaccct gctaagcaga cactgccatc tctgcccctc ggcccggcac
      181 ctggccatct accttttgga ccactttatg gaccagtaca acgtcaccac ctccaagcag
      241 ctgtacactg tggctgtctc ctgcctcctg ctggcaagta agtttgagga cagagaagac
      301 cgtgtgccca aattggatca gataaacagt acaaggatcc tgagcagcca taacttctcc
      361 ctcaccaaga aggagctgct caccacagaa cttctgctcc tggaggcttt cagctgggac
      421 ctttgcctgc ccacgcccgc ccactttctg gactactacc tcttggcctc catcagccag
      481 aaggaccacc actgccacac atggcccacc acctgcctcc gaaagaccaa agagtgcctc
      541 aaggagtacg cccactactt cctggaagtt accctacaag atcatatatt ttacaaattc
      601 cagccttctg tggtcgctgc agcctgtgtt ggggcctcca ggatctgcct tcagctttct
      661 ccatactgga cgagagactt gcagagggtc tcgaactact ccctggagca tctcagcacg
      721 tgcatcgaaa tcctgctggt agcatatgac aatgtcctca aggatgccgt tgcagtcaag
      781 agccaggcac tggccatggt gcccagctca tcatcagctc ccacccaagt gctgttccaa
      841 ccacccacct acccttctct cagccagcca ccgccaacaa cactagccca gttccagagt
      901 ccagcgcagg acttgtgctt ggcatatcgg gactcgttgc aggcccaccg ctcagggacc
      961 ctgctctcag gagacactgg tccatccctc cacacgccat acccaaccct tcagcccttg
     1021 gatatgtgtc ctgtgcccgt tcctgcatcc cttagcatgc agatggccat agcagctgaa
     1081 cccaggcact gccttactgc cacctacgga agcagctact tcagcgggag ccatatgttc
     1141 cccacaggct gttttgacag ctaggccaca attggaccat agggagaatc ctggaagacc
     1201 cgaccaagga agtaaatacc taagaagaga actagtccag gtgaggcaaa gaacctagta
     1261 tctttcaata gagagggtct gtgctttttt ttaaaaaaag aagaaaccaa caaaacaaaa
     1321 catccaggga catatctcac ccaacagggt ctctctggga aacctctttc atgtgtgctt
     1381 ggaggacaaa gacatggctc tgtgaccatt cccttgagct gggggatcca atggagcgta
     1441 tcagactgga atttgaggac tgcatacaga tcagtactac atctgggctt ctcaaagact
     1501 acttttcaca gctatgccac tgaaaaagaa ggggcacctg gcacgtttgt ctatgtccct
     1561 agaagatcca tcctgagtgt tcttcactcc ctagctctgc tccatgggcc ccatggccag
     1621 tgtttatgcc gagcactgac cccacggggc ccagtgagca gctatcttgc cctctgtatt
     1681 tgaacccccg atcttttcat tcttctagat attccacatg ctgctgcttc ctggaacaat
     1741 ctagctttct atcctgcaaa aaatcatctt gtttacatac cgtgtcaggg atttttgtga
     1801 tacttgaaaa ttccgtagga gcaaaaagtt ttaattgcct cactgtctgt cccacacgag
     1861 gctgtatctt ttattaaccc aactcgggac caactggtgg ataacaacag cgaggatgag
     1921 gatgccaccc ctccccgtct ggaagagtcc acccctggga tgctagtgtt ctcctgttgg
     1981 acttggatta ctgccccctg gtgggggaat gttgttgaga ggaagacaaa ggtttgaact
     2041 ggtcctcact tccctccacc acatgctcat agttcttaaa ccgatcccag ctttgagttt
     2101 ggccgataat taatcatgct gtggactgtt ataaaagtgg ggggactaat ggggtatgtg
     2161 acaccagcat ggataggcaa gagactgctg gagcaaaagc ccatgtctgg gatctgcagt
     2221 gcaagggctc aggaacaccg tcaccgtgtg caatatgtta tgattgtgac tcacagcctg
     2281 tgcttaagat gttcttgtgc ttgcggtctt tttttttttt gttgttattg ctgttgttgt
     2341 tttctggtca ggggatttgt tgttcaccca tcagaattgg aagggaggtg caaaagacca
     2401 cagaaacaaa aattgtaatt ttgtttcagt tggtttttgt tttcttttac tttgccagga
     2461 gatttttttt tttttttgag atgatcagat gtagctaagg ctaccctcaa acttagtgca
     2521 tagccaaagc tggccttgaa ctcctgatcc tcctgcttta gcctcccatg tttgccacca
     2581 cacctagtct cccggctttg acacattttc tgatccaaga gaccctagca gggactgccg
     2641 ggaaggtggc cacatgctac tgagtcggat ttaacagtga cagggctttt ctaagcagat
     2701 gaatgtctca tggaaacaga acaaggaaag agctggaggc tgtcattttc tctattagca
     2761 taggaacctg cacattcgtt tgttatttgt atgtgtgtgt gtgtatgttt tggctcctcc
     2821 ccctccacct cctccaccag cctctgtatt tatatgcaac tgatttggag tctgttatat
     2881 ctgtctattc tgggctgggg cttttgagag aagtatctcc acgggagccc cagaactagc
     2941 ctgattctca ggatcagatg tccttcaata aacacatcac ctgctcttgg
//
