LOCUS       NM_001106369            3820 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus cyclin J (Ccnj), mRNA.
ACCESSION   NM_001106369 XM_001057184 XM_220004
VERSION     NM_001106369.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473986.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_220004.4, XM_001057184.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132265,
                              SAMD00132270 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..3820
                     /gene="Ccnj"
                     /note="cyclin J"
                     /db_xref="GeneID:294053"
                     /db_xref="RGD:1306399"
     exon            1..165
                     /gene="Ccnj"
                     /inference="alignment:Splign:2.1.0"
     exon            166..275
                     /gene="Ccnj"
                     /inference="alignment:Splign:2.1.0"
     CDS             207..1346
                     /gene="Ccnj"
                     /codon_start=1
                     /product="cyclin-J"
                     /protein_id="NP_001099839.1"
                     /db_xref="GeneID:294053"
                     /db_xref="RGD:1306399"
                     /translation="MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLNLRRYFA
                     DLIAIVSNRFTLCPSARHLAVYLLDLFMDRYDSSIQQLHLVALSCLLLASKFEEKEDS
                     VPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETFQWNLCLPTAAHFIEYYLSEAVH
                     ETDLHDGWPMVCLEKTKLYMAKYADYFLEVSLQDYAFLNYAPSLVAAACVASSRIILR
                     LSPTWPTRLHRLTAYSWDFLVQCIERLLLAHDNDVKEANKQRGQSAPQSAQLTVFQTA
                     QPSRPVHFQQPQYLHQTSVQYRHPVSEQPSRQQIVSTTHTSSYTLQTCPAGFQTSVQG
                     LGHMQTGVGMSLAIPVEVKPCLSVSYNRSYQINEHFPCITPCFER"
     exon            276..486
                     /gene="Ccnj"
                     /inference="alignment:Splign:2.1.0"
     exon            487..786
                     /gene="Ccnj"
                     /inference="alignment:Splign:2.1.0"
     exon            787..946
                     /gene="Ccnj"
                     /inference="alignment:Splign:2.1.0"
     exon            947..3820
                     /gene="Ccnj"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtacagcga gccgcctgcc ggtcctttaa caatgggcgg cgcgagcgcc cgggtgctgg
       61 gcccaagctg aggtgggggc ttcgcggccg actgtccgcg gcatgaacgc tgccggcgcc
      121 ccgcgaacgc cggcccggct ggggctgtga gggccgcggt tccggactga agttgcggcg
      181 tctggctggg cgcgcctccg gcttccatgg agctggaggg gcagtggtgg cgaggacagc
      241 tggctgcgga tattcaccag gcgcttcggt acaaggagct gaagctgcct tcttacaagg
      301 gccagtctcc tcagctgaat ctcaggcggt attttgctga tttgatcgcc attgtgagca
      361 atcgcttcac actctgccct tctgcccgac atcttgcagt ctacttgctg gacctgttca
      421 tggaccgcta tgacagctcc atccagcagc tgcatttagt tgcactctcc tgtctgcttc
      481 tggcaagcaa atttgaagag aaagaggaca gcgtgcctaa gctggagcag ctcaacagcc
      541 tgggctgcat gactaatatg aacctggtgc tgacgaagca gaacttgctg cacatggagc
      601 tcctgctcct agagaccttt cagtggaacc tctgccttcc cacggctgcc catttcattg
      661 agtattacct ctctgaggca gtacacgaga cagaccttca tgacggctgg ccgatggttt
      721 gcctggaaaa gactaaactt tacatggcca agtatgcgga ctacttcctg gaagtgtctc
      781 tgcaagatta tgcctttcta aattatgcac cttctttagt agctgctgca tgtgtggctt
      841 cttcgaggat tatccttcgt ctgtctccaa catggcccac aagactgcac cgtctcactg
      901 cttactcctg ggacttcttg gtgcagtgca ttgagcggct gctgcttgct cacgacaatg
      961 acgtgaaaga agcaaacaaa cagaggggac agtcggctcc tcagtcagca cagctgactg
     1021 tgttccagac agcgcagccc tcacggccag ttcacttcca gcagcctcag tatcttcatc
     1081 agacctccgt gcagtatcga catcctgtgt cagaacagcc aagccgtcag cagattgtgt
     1141 ctaccacaca cacctcgtct tacacgctgc agacttgtcc tgccggcttt cagaccagtg
     1201 ttcagggcct tggccacatg cagactggtg ttgggatgtc cctggcaata ccagtggaag
     1261 ttaaaccctg cctcagtgtt tcctataacc ggagttacca gataaacgag catttcccat
     1321 gcattacccc atgctttgag aggtgatgac gtatgtgtgc gggtcataga taacccagac
     1381 ggttctgaga cggagagctc tggagcaagc tcatgtactc ctcttcagaa ggaaaggata
     1441 caaatagtac cacagagcaa tggccccagc accagaagac tgagtatccc tttcagtacc
     1501 atgagtacct aggaggactt ggaaagtagt gacatgtgtc aaatcctatg tgacagaaat
     1561 gtcccagtcc ttggctgatg gttcaaatat ttcgaaatgc tcaatacagc agaaaatttg
     1621 ccattctaag atttgacctg tggtgggctt tggccttatg ctggcataca tgtcaaagac
     1681 ttagtgtttg tctgtggact tgccaaacca tcttctatga aggaaagtta cagtattaat
     1741 ttttgaagaa ttgttttaat cctgcagctc agagttttgt gacctactgg taggtttcta
     1801 aattcaaact catcggttgc taagtatact aatctgtgca gttaaaaaat ccatatgatt
     1861 ttatataact tcatatcata aatataggtg ctggatttat atactacagt tagaggcgaa
     1921 gcagatacat accttgaaat catggtcata attttcgttt tgctctgcta cctttccccc
     1981 taagtggtca gccccgattc ttcagggttt agcacatcta actcagggaa cttgtagtac
     2041 ttggaaacac ttagttgtaa ccaacatgcc ttgggaatgt taggacatga actacctgtg
     2101 taaggctgca gtgcccctgc tgggatgaga ctagatcata gcacaggacg aacgacatgg
     2161 gtcctgagtt cgtgcatgga cggcgtgcgc atcacgcagt gcagtcagag gcctgtactc
     2221 agattggttg tcactcgtaa gacagtgttc aggggaaggc ctcctggaaa gggtcagtgc
     2281 tagagtggag tcgggtagga ttgttctgga gttgagggtg gctagggtcg tcctcaggtc
     2341 gggctggtgc cgcactttgt ggggagggtg gttcttgagc acccttggga tccagaaagt
     2401 cagggcaggg cattgactcc aatagctgct ttctgtggtt gactgtaact acgcagggac
     2461 aactcactgt actgggcgtg agtgaaacag caacagtcgt catagcaagg gcaacctggc
     2521 cgtgaggtac cgtcaggagg tggggaggac agacgtgaga agtgataagc tgtgagtctg
     2581 gtatactctt aaccatggaa gagcagagag ctggtggagg gagacttcct ggcttaagac
     2641 gagtcagatg tgtgtgtttt tataagagag cacttgaata gaagggaaac tgtggccgct
     2701 gagagaccat agtgggtatt gatgagagct cactgtaaag atgtggatgt gcagcaggag
     2761 tcagtggcct ttgctgggaa gggaagggca gggcagggca gggcagggct ccacagcgtg
     2821 gtggactgag agaggaagct ccggtggaga agtgcggtgg gtagcttctg ccaacaggaa
     2881 ttcttagaga aatgttttcc ttaaaaggaa gctaactttt atatttagcg tacataaggc
     2941 atggtgtgga cttactagtc agtgatgaaa accactcagg taagaacact cgtgaatggt
     3001 tttcaagcgt gaaaactgtt gtaggaacgt atcgcttttc ctctttaaaa tggctgctaa
     3061 ttggatttta taaactctta agaaaacttg aattattagg aggaagtagg ttcaaaagat
     3121 aatgtatctt tcacgttcac agatagagcc cagcaacatg gagtccaatt ttcagtgttg
     3181 taactacctc agtaatgcta tgaatgtaag agattgggat agaatcctaa cttgaaacaa
     3241 cagtcagtgc ctgtggtaac ttaatgtcct gtcagtgctt ttattgattg gttatgtgtc
     3301 attcttgttg tcaaagaata cttgcctttt ttaaaaagct tattaacact ttccagttta
     3361 tatttaaaaa gctaaagaac actggattaa tccttctggg ggtggagtca gataattcat
     3421 gactattgct gcattcccgg atggggaggc tggagaatca tgactgtttc taaaaacagc
     3481 aggattcaat ataaatgcaa ctcaacgaca gttagctggg gggtgggagt gtgtgggttt
     3541 cattttgttt aatttattaa ttagtcttaa aggttttttt ctgttttgag attactggac
     3601 catcattaaa tgtgtactgt gaaaagatta atgatgtgtg taaaggactt aaccagagtc
     3661 catgaaataa acactattca agtacaaaat gcaaaccaaa atatctgtgc tctgactaac
     3721 tacacacagt gagtacagtg ctgggtctac acagcagggt ctacacagca gggtcagtga
     3781 gtgctgtgca cttgatttta aaataaaagt cattttcact
//
