LOCUS       XM_039106863            2331 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CCM2 like scaffold protein (Ccm2l),
            transcript variant X1, mRNA.
ACCESSION   XM_039106863
VERSION     XM_039106863.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106863.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2331
                     /gene="Ccm2l"
                     /note="CCM2 like scaffold protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 42 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:311550"
                     /db_xref="RGD:1305202"
     CDS             98..1792
                     /gene="Ccm2l"
                     /codon_start=1
                     /product="cerebral cavernous malformations 2 protein-like
                     isoform X1"
                     /protein_id="XP_038962791.1"
                     /db_xref="GeneID:311550"
                     /db_xref="RGD:1305202"
                     /translation="MEYEAKKGKKGFVSPIRRLVFPKAARQAAFKSNVSRRPLHSMPL
                     YPPDYLIDPHILLCDYLEKEVKFLGHLTWVTSSLNPSSRDELLQLLDTARQLKELPLK
                     TTPEQDSILSLSARCLLLTWRDNEELILRIPTHEIAAASYLQDDALHLLVLKTGLGVD
                     PVPAGMDGSPGSSGRDPGPPGAAPEKRRVGTAERRHTICSLDWRMAWGGGAGAEARAA
                     GGGGSLERQRAGARASGSWERRQTFSGSWERRHAGGGAGKPGGSWERRQASGGVGGSW
                     ERRHPGPNPLDPQNHSPDAYCNLVILAVANRDAAEESCALICQVFQIIYGDQSIECVD
                     RAGYHYRPTPKRPWLSSCSESCRTDGTFAYDADLSCCSSFNGSQDTFEACYSGASTPS
                     FHSSHCSSIDHSSWAFEQLQDYMVTLRSKLGPPEIQQFAMLLRDYRLGLPIQDYCAGL
                     QKLYGDRRKFLLIGMRPFIPDQDIGYFEGFLESMGIREGGILTDSFGRIKRSMSSTSA
                     SAVRSYDGAAQRPEEQTFHQLLTDITHDIEALAPDDDDVYEDVSPSGGDQVEDNYL"
ORIGIN      
        1 tttccgaccg accgggcagg aaaaagaaca aaggaaatgg aggggggtcg ggagggggca
       61 gagaggaggg aggcaggagc cgaggagcag tttcaccatg gaatatgaag ccaagaaagg
      121 gaagaagggc ttcgtgtccc ccatccgaag gctggtgttc ccgaaggctg cacgccaggc
      181 cgccttcaaa agcaatgtca gccgcaggcc cctgcactct atgcctcttt atccccctga
      241 ctacctcatc gacccccaca tcctgctgtg tgactacctg gagaaagagg tcaagttcct
      301 gggtcacctc acctgggtga cttcctcact gaacccctcc agccgagatg agctcctgca
      361 gctgctggac accgccaggc agctgaagga gttgccgctg aagaccacgc cggagcagga
      421 cagcatcctg agcctgtctg cacgctgcct gctgcttacc tggcgggaca acgaggagct
      481 catcctgcgc atccccacgc atgagattgc tgctgcctcc tacctgcagg acgacgctct
      541 gcatctgcta gtacttaaga ctggtctggg cgtggacccg gtgcccgcgg gcatggacgg
      601 cagcccggga agttcgggtc gcgatccagg ccctccgggc gccgcgcccg aaaaacgacg
      661 ggtgggcaca gccgagcgac ggcacaccat ctgcagcctg gactggcgca tggcgtgggg
      721 cgggggcgcg ggcgcggagg cacgggcggc cggaggcggc ggcagcctgg agcggcagcg
      781 cgcaggagcg agggcgtcgg gcagctggga gcggcgacag acgttcagcg gcagctggga
      841 gcggcggcac gcgggcgggg gcgcgggcaa gccgggtggc agctgggaga ggcggcaggc
      901 gagtggcggc gtcggcggca gctgggagcg acgccacccc ggccccaacc ctctggatcc
      961 ccaaaaccac agccccgacg cctattgcaa cttggtcatc ctggctgtag caaacaggga
     1021 tgctgctgag gaatcctgtg cactcatctg tcaagtcttc cagatcatct acggcgacca
     1081 gagcatcgag tgtgtagacc gggctggcta ccactacaga cccacaccaa agcggccatg
     1141 gctctccagc tgcagtgaga gctgccgcac cgatgggaca tttgcctatg atgccgactt
     1201 gagctgctgc agttccttca atggctccca ggacacattt gaggcatgtt acagtggcgc
     1261 gtccacaccg tccttccaca gctcccactg tagcagtatc gaccacagca gctgggcctt
     1321 tgagcagcta caggattaca tggtcacgct gcgaagtaag ctgggtcctc ctgagatcca
     1381 gcagtttgcg atgctgctac gagactatcg cctggggctg cctatccagg actactgtgc
     1441 aggcctgcag aaactctatg gggaccgacg gaagttcctt cttattggga tgcggccctt
     1501 catcccagat caggacatcg gctacttcga gggcttcctg gagagcatgg gtatccgcga
     1561 gggtggaatc ctcactgaca gcttcggccg catcaagcgc agcatgagct ccacgtctgc
     1621 gtctgccgtg cgcagttatg acggggcggc ccagaggccg gaggagcaga ccttccacca
     1681 gctgctgact gacatcacgc atgacatcga ggcactggcc ccggacgatg acgacgtcta
     1741 cgaggatgtc tccccaagcg ggggcgacca ggttgaagac aactacctgt agctccgcgg
     1801 cacacttgcc cgtatgacac catccccagg gttcctagac tcctgggttc ccatccgtgc
     1861 cttggggctt cttttccctg caaatgggtt cacagggctt cagtccttgc aataccaaga
     1921 aaatcctgta gagggcggga gagccagact ctagagtgtt cttcaagcta aagaatcgct
     1981 ccacctactg gccgacagaa aagatatcta attcacgccc cactttctgc aaccctgccc
     2041 aaccccaaac cagaaacatt tccagaacct agagacctct cttcaatttt acaggctgag
     2101 agactgaaga gacatggggg ggtgtgtttg tttgtttgtt tttaagggaa tggaaatatg
     2161 agacaacgcc aggtccttgg atatcgacac tcatctccac atctctagga taatttcagc
     2221 tccacccagc tcacaagtgg tcatcgggat gaatggaggg caagacatta gggttgggcc
     2281 tggcatgctg taggtgctca ataaatgctg tttctctcca cttggaatgt t
//
