LOCUS       XM_039110223             553 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus C-C motif chemokine ligand 27 (Ccl27),
            transcript variant X6, mRNA.
ACCESSION   XM_039110223
VERSION     XM_039110223.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..553
                     /gene="Ccl27"
                     /note="C-C motif chemokine ligand 27; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362505"
                     /db_xref="RGD:1304660"
     CDS             83..532
                     /gene="Ccl27"
                     /codon_start=1
                     /product="C-C motif chemokine 27 isoform X4"
                     /protein_id="XP_038966151.1"
                     /db_xref="GeneID:362505"
                     /db_xref="RGD:1304660"
                     /translation="MSRLRRYEVALEAEEEIYWGCFYFFPWLRMWRRERRLPLTGWHP
                     WNKTKEKQEALPLPSSTSCCTQLYRQPLPTRLLRRIVRVELQEADGDCHLQAVVLHLT
                     RRSVCVHPQNRSLARWLERHGKRLQGTLPSLNPVLQKKMCPSPQKQK"
ORIGIN      
        1 taaaaatctc cattcagggc ctaaacgtcc cagctatact gccgctagac ccctctcctt
       61 ggaaccgttc ggagctcgag acatgtcgcg attgaggaga tacgaggtgg cgctggaagc
      121 ggaggaggag atctactggg gctgcttcta cttttttcct tggctgcgaa tgtggcgcag
      181 ggagcggagg ctcccgctga caggctggca tccgtggaac aagactaagg agaagcaaga
      241 agccttgcca ctgccctcca gcactagctg ctgtactcag ctctataggc aaccactccc
      301 aaccagacta ctgaggagga tcgtccgtgt ggagctgcag gaggctgacg gggactgcca
      361 cctccaagct gttgtgcttc acctgactcg gcgcagtgtc tgtgttcatc cccagaaccg
      421 tagcctggct cggtggttag aacgccatgg gaaaaggctc caggggaccc tacccagttt
      481 aaatccggta ctacaaaaga aaatgtgccc gagcccccaa aagcaaaagt aataaagcaa
      541 cattagacga taa
//
