LOCUS       NM_001002822            3067 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus coiled-coil alpha-helical rod protein 1 (Cchcr1),
            mRNA.
ACCESSION   NM_001002822
VERSION     NM_001002822.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3067)
  AUTHORS   Wang WJ, Tay HG, Soni R, Perumal GS, Goll MG, Macaluso FP, Asara
            JM, Amack JD and Tsou MF.
  TITLE     CEP162 is an axoneme-recognition protein promoting ciliary
            transition zone assembly at the cilia base
  JOURNAL   Nat Cell Biol 15 (6), 591-601 (2013)
   PUBMED   23644468
REFERENCE   2  (bases 1 to 3067)
  AUTHORS   Corbi N, Bruno T, De Angelis R, Di Padova M, Libri V, Di Certo MG,
            Spinardi L, Floridi A, Fanciulli M and Passananti C.
  TITLE     RNA polymerase II subunit 3 is retained in the cytoplasm by its
            interaction with HCR, the psoriasis vulgaris candidate gene product
  JOURNAL   J Cell Sci 118 (Pt 18), 4253-4260 (2005)
   PUBMED   16141233
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CV126837.1 and BC105619.1.
            
            On Oct 2, 2009 this sequence version replaced NM_001002822.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-631               CV126837.1         1-631
            632-3067            BC105619.1         630-3065
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..3067
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /note="coiled-coil alpha-helical rod protein 1"
                     /db_xref="GeneID:406196"
                     /db_xref="RGD:1302992"
     exon            1..488
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     CDS             291..2900
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /note="HCR (a-helix coiled-coil rod homolog)"
                     /codon_start=1
                     /product="coiled-coil alpha-helical rod protein 1"
                     /protein_id="NP_001002822.2"
                     /db_xref="GeneID:406196"
                     /db_xref="RGD:1302992"
                     /translation="MWPHSSGARPWANPLIGNDPEIVTRWCLDGLPNGPTIPWRGLWR
                     LGSLYCVQRVLSCRDRRHLRRKGNIGDWRQELEDSYNGEMLPPSGFDGLVPPSHFQAR
                     PLSTLPRMASTWASNVPLVQSPPGQDVLERRLDTQRSTVTMWGQDFCGDRQGLGRRGR
                     SLELGVSGALSQQAELISRQLQELRLLEEEVRTLRETSLQQKMRLESQAVELDALAVA
                     EKAGQAEAEGLRTALAGAEMVRKNLEEAKQKELEEIQSLHQEQLSSLTQAHQKALDSL
                     TSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRK
                     YVGEQVPPEVPSQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQE
                     EELTRKIHPLDPLEPEFPKKCRSLLRGWREKVFALMVQLKAQDLQHRDSTKQLRDQVA
                     ELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQEQQAASA
                     EEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLMARKLA
                     LVQLRLESCPPPEPAPPPDTDLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQG
                     EAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQE
                     IYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQE
                     LRRLQDEARKEEGQRLTRRVQELERDKNLMLATLKQEGLLSRYKQQRLLAVLPSGVSK
                     KCSSQPVEPPESAAASPCKESMKGSLTVLLDNLQGLSEAISRDDAICLEDNQNTKSPP
                     SNPLLGRSCQEEE"
     exon            489..555
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            556..769
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            770..1073
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1237
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1373
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1484
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1485..1634
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..1745
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1746..1852
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1853..1965
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            1966..2011
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            2012..2160
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            2161..2349
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..2451
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            2452..2603
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            2604..2754
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
     exon            2755..3043
                     /gene="Cchcr1"
                     /gene_synonym="C6orf18; Hcr"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgagaaagat tcagactagg acttaggact aggaagagaa gcgggtagga atttcggggg
       61 tcgagtgaaa aaaaaaaaaa cttgaattaa cggaagtggg ggaaaggaga tgctgtagga
      121 ctctgaagag aggtgcatcg gggatggaaa tcccctaggg gatagagtgc aactgaagcc
      181 agttacagag aggcacagat gagttagcag gaagctggct tcccagcaac gggcttccag
      241 gctgcgcggg ttcctccctc ggggatccta gggaagccgc ttaaccccac atgtggcctc
      301 attcttctgg ggccaggcct tgggctaacc ctttaatagg aaatgaccca gaaatcgtga
      361 ctcgatggtg cctagatggg cttcccaacg ggcctaccat tccgtggcga ggactgtgga
      421 gactgggttc cctatactgt gttcagagag tcctgagctg cagggaccgt agacacttaa
      481 ggaggaaggg gaacataggt gactggagac aagagctaga agattcatat aacggggaga
      541 tgctgccacc atcaggtttt gatgggctgg ttcctccctc ccacttccaa gctcgacccc
      601 tctcaaccct gccaagaatg gcctcgacct gggcttcaaa cgttcccttg gtccaatctc
      661 cgcctggcca agatgtctta gagaggcggc tagacactca gaggtcgaca gtgaccatgt
      721 ggggacagga tttctgtgga gacaggcagg ggcttgggcg gagaggcagg tctctggagc
      781 tgggggtctc cggtgccctg agccagcagg ctgagctgat ctctcggcag ctccaagagt
      841 tgaggctgct ggaggaggag gtccggaccc ttcgggagac ctccctgcag cagaagatga
      901 ggttagagtc tcaggccgtg gagctggatg ctctcgcagt ggcggagaag gccgggcaag
      961 ccgaggccga gggcctgcgc accgccttgg ccggagcgga aatggttcgg aagaacctgg
     1021 aagaggcgaa gcagaaggag ctggaggaga ttcagagtct gcaccaagag cagctgtcct
     1081 ccctgacaca ggctcaccag aaggctctcg acagtctgac cagcaaggct gaggacttgg
     1141 agaagtctct gaacagcctg gaaatgaaac aggcagggga agccaagcag ctgactatgg
     1201 cccagaagga ggcagaactg cttaggaatc agctgagtaa gacccaagaa gagctggagg
     1261 ctcaggtgac cttggtggag aatctgagga agtatgtagg ggaacaagtc cctcctgagg
     1321 ttcctagcca ggcacgggag ctggaacaga aggagctgct agacaccttg aagcacttga
     1381 aggaggacag gactaacctt caggccaccg tggagctact gcaggtacgg gtacagagcc
     1441 tcacacacat gctcgccctg caagaagagg agctgaccag gaagattcat cctctagacc
     1501 ccttggagcc cgagtttcct aagaagtgcc gctcgttgct gcgcggctgg cgggagaagg
     1561 tgtttgccct tatggtgcag ctcaaagccc aggacctgca gcacagggac tccaccaagc
     1621 agctgaggga ccaggtagca gagctccagg agcaagtgac tgcccaaagc caggagcagg
     1681 ccatcttgca gcgtgcccta caagacaaga ctgcacaggt ggaggtggag cggatgagca
     1741 ccaagaccct gaagatggag ctgagtcagg cgcaggaggc caggtggagg caggagcagc
     1801 aggcggcctc tgctgaggag cagctgaagt tcgtggtcag tgctatgaac agcactcagg
     1861 ccagactcca gagcaccatg accagggtgg accaggctgt agcccggatt cccagcctct
     1921 gcaaccggct cagctatgct gtccgtaagg tccacaccat taaaggtttg atggctcgaa
     1981 agttggctct tgttcagttg cgcctggaga gctgtccccc acctgaacct gcacccccac
     2041 cggacacgga cctgagcctt gagttggagc agctacggga agaacggaac cgcttggatg
     2101 cagaactgca gctaagtgcc cacctgatcc aacaggaggt gggccgggta cgggagcaag
     2161 gagaggcaga gcaccggcac ctgaccgaag tagcccagca gttggagcag gagctgcagc
     2221 gtgcccagga atccctggct agcgttgggc agcagctgga ggcagcccgt caaggccagc
     2281 aggagagcac agaggaagct gccagcctcc gtcaggagct gacccagcag caggagatct
     2341 acgggcaagc tctgcaagag aaggtggcgg aggtggaaag tcggcttcgg gaacagctct
     2401 cagacacaaa gaggaggctg aacgaggccc ggagggagca ggccaaggct gtggtttcct
     2461 tgcgccagat ccaacacaaa gccactctgg aaaaggagcg gaatcaggag ctcaggcgcc
     2521 tgcaggacga ggcccggaag gaagaagggc agcggctgac acggcgagtg caggagctgg
     2581 agagggacaa gaacctcatg ctggccacct tgaagcaaga gggtctcctc tcccgttaca
     2641 agcagcagcg cctgttagca gtgcttccct cgggagtgag taagaagtgc agctcccagc
     2701 ctgtagagcc ccctgagtct gcagcagctt caccgtgcaa ggagtctatg aaaggctccc
     2761 tgactgtcct gcttgataac ctgcaaggcc tgagcgaggc catctccaga gacgacgcta
     2821 tttgtctgga agataaccag aacactaaga gccctccttc caatccactg ctgggccgga
     2881 gctgtcagga ggaggagtga agctagcctg gaattggatc cccaggaggg ttggatggga
     2941 ggacatgggg tggggccagc ctggccctgc tccccagcaa gccttgggac cccagcttcc
     3001 accaagttca aactctgtac tgaataaaga tggctggaat ggaaaaaaaa aaaaaaaaaa
     3061 aaaaaaa
//
