LOCUS       XM_056985386            4777 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 9B
            (Ccdc9b), transcript variant X1, mRNA.
ACCESSION   XM_056985386
VERSION     XM_056985386.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4777
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4777
                     /gene="Ccdc9b"
                     /note="coiled-coil domain containing 9B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 22 ESTs, 3 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     55 samples with support for all annotated introns"
                     /db_xref="GeneID:311323"
                     /db_xref="RGD:1565536"
     CDS             16..1581
                     /gene="Ccdc9b"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 9B isoform
                     X1"
                     /protein_id="XP_056841366.1"
                     /db_xref="GeneID:311323"
                     /db_xref="RGD:1565536"
                     /translation="MKTGVCWPAIPFAGKHGQETYWDSGPGPPNAEPTMRRHEEKDAE
                     LDRRIVALRKKNQALLRRYQEIEEDRRQAEQGGMAVTTPGFLQPDSLTVTISQVPGEK
                     RVVSRNWARAPLSPGVTATQTDGDAADSLGTFSMGDRVELAVTMENKAKAKRIVSEKP
                     MSQARSPRAKGTSGGGRGQSSPLQTTFSPDSAGKGALEPRSPGLVPGPPSQQPLGMPP
                     EATWDYTQWKQEREQIDLARLARHRNPQGDWSRPWDLDKAKPMPQNCNKPRDKDLAMG
                     SRKGPRTHQKPQHPPSFLDGKCRGGQSGRPSVTSTIGSKPQGKERLTGRARRCDVKED
                     QKLQSQEGSQSTMKTPSAEEECIQKRTEREPDRQETKSATSPILASPEGLREELGTST
                     ASLAPDSPQHSDLAPLDLSVGGASSPRPGESTHIPSPKAGAQESPESWPNGSEQQTLE
                     GSDHQPGLEVHSCTESLREAETPEPKEDRVARAGAQQNLTPRSRPPRGIGPRARGMSK
                     RSRAGGPGPAGRC"
ORIGIN      
        1 ctactagtgg gagggatgaa gaccggtgtg tgctggccag ctatcccatt tgcaggcaaa
       61 cacggacagg agacttactg ggactcagga ccagggcctc ccaacgctga gcccacaatg
      121 cgcaggcacg aggagaagga tgccgagctg gaccgtagga tagttgccct gcgcaagaag
      181 aaccaggctt tactcagaag gtaccaggag atcgaggagg atcgtcggca ggcagagcag
      241 ggaggcatgg ctgtgaccac tccagggttc ctccaacctg acagcctcac ggtcaccatc
      301 agccaggttc ccggtgagaa gagggtggtc agcagaaact gggcgagggc acccctttcc
      361 cctggagtga cggccacaca gacagatgga gatgctgcag actcacttgg tactttcagc
      421 atgggggacc gggtggagct cgctgtcacc atggaaaaca aagccaaggc caaacggata
      481 gtaagtgaga aacccatgag ccaagcaagg agcccaaggg caaaggggac atctggagga
      541 ggccggggcc agagttctcc cttgcagacg accttcagcc cagattccgc agggaagggt
      601 gctctggagc cccggagtcc aggcctggtc ccaggcccac cttcccaaca gcccttgggg
      661 atgcctcctg aggccacctg ggactacacg cagtggaaac aggagagaga gcagattgac
      721 ctggcccgcc ttgcccggca tagaaaccca cagggtgact ggagccgccc atgggacctg
      781 gacaaagcca agcccatgcc acagaactgc aacaagccta gggacaagga cctggccatg
      841 ggcagcagaa agggtcctag gacccaccaa aagcctcagc atccaccgtc attcctggat
      901 ggaaaatgtc ggggtggaca atctggaaga ccctctgtga catccaccat aggcagcaaa
      961 ccccagggga aggagaggct aactggcagg gcccgaaggt gtgatgtcaa agaagaccag
     1021 aaactgcaga gccaggaggg aagccagagc accatgaaga ctcccagtgc agaggaagag
     1081 tgcatacaga agcggactga aagagagcca gacagacaag agaccaagtc tgcaaccagc
     1141 ccaattctag cctccccaga ggggctaaga gaagagttgg gaacctctac agccagtttg
     1201 gccccagact ctccacaaca ttctgacttg gctccccttg acctctctgt gggaggagct
     1261 agcagcccca ggcctggaga aagtacacat atacccagtc caaaggctgg ggctcaggaa
     1321 agtccagagt catggccaaa tggttctgag cagcagacct tggagggcag tgaccaccag
     1381 ccggggctgg aagtccacag ttgcactgag tcactgagag aagcagagac cccagagccc
     1441 aaagaggaca gggttgctag ggctggggcc cagcagaacc tgacaccaag aagcaggccc
     1501 cccagaggaa ttggcccaag ggcaagaggc atgagtaaaa gaagcagggc agggggtcct
     1561 ggccctgcag gaaggtgctg agtgaagctc aggggatttg gggagctagg ctggggggag
     1621 ggaggctcag tcaagagtct tctgtgaggt gggagtatgg ttgctggtgg gagtcttgta
     1681 cttttctggt tgagcaatgt ggcaaaactc cacagggaca ccaagtgagg gcctcttctg
     1741 catgcctctc tacaccagtg ggttgttaca cacaggcaag ggccctggtg tacttgccag
     1801 gctggggtct cctgttcagg gctggtaccc ctggcctggg cttactgtta cctaggccat
     1861 aagcctttcc cacagagatt tggtaggacc ccaatacata ggtctcctgg ctccttgtaa
     1921 ttcgtcattg cctggtctcc ctccccagtc acaagcctcc aggctcctca gctccaggcc
     1981 gtctcaaagc tggtatggtc agcttaggct ctttctgata accatgccct tcatccaggt
     2041 gactctcagt cccacagttc cacagtcttc taagatggcc aaacctggat ttcaacagtt
     2101 gatggaggcc ccgagaaagt ggtttggggc tcacagctgt caggaacaca cttggagagg
     2161 aagagtaaaa cctaaggctt cttgggggaa aggaggcatt cagagggcct ctttgaactg
     2221 ggctaggatt cccctgttgc tgcaggagag tgggagagct cactagcagg tgctgagcct
     2281 ccctcctcac atccagatct gacataatgg gtgccctgag tagaccttgc agccgggagc
     2341 catttcctgc cctctcttcc ttctccactt cccctcacta aggccatgca aaagcaagca
     2401 cacagtcaga gacagaggga tagcaacctc agctgagtgc gacattggga tgtgtctttc
     2461 tcactccatc caggcccctc ccatgaggcc cacgtctggt gaattatcca gactctgcac
     2521 aagctgtggc ttcctttcaa tacaacaaac atttcctgag catcctctcc cagtaatcca
     2581 gccagtgggc gagggtgact ctgccaacag gagggaggga agaaacccag tcatccaaca
     2641 gctcgaggct gaatggcaag tgttctcatc tgttgacgcc tggcaacact gggtatcatg
     2701 agggtaggag ccccacctct actcccctct tgatatagca tgtgccctct gcgcccaagc
     2761 ccttggtggc accatgtagc cccccttcct cccctcctct ctacaagggt aagtgggtct
     2821 tccataaccc tctgaagctc taggaaaagt gcttgtcttc tcatctttac gcaggaggcc
     2881 tgtgacttgg gttcctgcct tgttcttcct gcctcttggt cccatctcta ttccctctac
     2941 tcaggcaggg gtgaaccttc agcaggtcaa gctgtttaga caactcttct cacacttgtg
     3001 tgtgacgtgt ggtgcagttg aactcagtgg ggctggggaa ggtccaaatg cttacatttc
     3061 taatatgccc caggcgaggg ggacatggct gctccgtttt ggcctgaaga accctttgag
     3121 gagtaagagt ctggacttga gtgtgcaaag aagccagttt agagcagact ctagatctaa
     3181 agcgagttgc aggcccttaa gaaccaggag agtgctaccc taccaagtgg aggaggcttc
     3241 ctggcttaga ggtgcctgca gaggattatt cgggcagtgg gtattggagt caactctgca
     3301 gtgcatcaaa aggaagctga ctggggtgtg gcaggatgaa ggggtggaag agtcagtgtg
     3361 gtggctcaga ggaaatccag aaatgggaaa aaaaaattcc tgtacatatg agacatgcct
     3421 gggccagagg gaagaatcca aactcatgtt tccattttgc cttccagtct caagtatatt
     3481 ttgatttgga gtgtgacaca ggccctggag ctcatgactc ctaaagatgg gactggaata
     3541 gagcaggttc gagcagaaag agttcttgaa ttctgatgtt gcaaagacat ggctgtgatc
     3601 aagaatgtga agtcttggct gggggcgtag gttggtagag ttcgttctca gcatacctga
     3661 actcacaggt tcaatctcta agactcctca agacagagac agacggtgaa tgagtgactg
     3721 agtcggtcag tcagacagac agacagatac agaaagagag aggagatgag gagaaaggaa
     3781 gagaggagaa aaggggtagg gaaaagggag agaggaaaaa gaaaagtcac atttacctcc
     3841 cgcttgatgc tgcccactgt gcaatgtgat ccatcgaaca acacagggca aggcatgtct
     3901 gaccacaggt tgaggatgta aagatatggc ggggatctgg ttcggtcttt acaaatgaac
     3961 ctaagcagga agtggcaaag aggactgaga ggacatgggg gcttctcttc atgggcaaca
     4021 gcctttagag ggaagccgtc ctggcaattg gtgagacagg aagctgacac aggacatctt
     4081 cattatagaa gtctgcagtg cctgtcacaa cagcaagctt ttcctgggag aggggagctc
     4141 ttctccagga caagacacag gtgacacctc ccagctgtct gtccaggttg taccatcctg
     4201 ctgttagtgt caactatgga acaggagaaa cccgtgtcag tcgttcctct tgaggcctca
     4261 agggccagcc atgactgttc ctggttgctt tgttgaaagg tctgacccag agttttccct
     4321 taggaaaccc tcctccctcc aacaagcaga cgcaactact ctttaaaagt ccggagtctt
     4381 ctttaaacgc aactctgggg aaccagctgc atggttggaa gaagccaggc aaggagggca
     4441 cccggagggc ctggcaggga gagcacgagg ttagccgggg tgggagttgg ggggcaatcc
     4501 tgtcagaaag gtgtgcattt agatcccagg ccccaggcga agcccacttt ggagtctgag
     4561 agaataaatc ccaaccccat acctctcatc tacttgttca acattaacct ctaaaagcct
     4621 cagtctcctt acctgtagaa tgaggcttgc tgtgctgacc ttgaagggtt gttgagaaag
     4681 ctagagtgtg caagacatgc ctacactcag tagacactcg gaacagtagc ctggtgctct
     4741 gaaaatacgt tgaattaaat gaagtgggcg tttgaca
//
