LOCUS       XM_039092824            2505 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 96
            (Ccdc96), mRNA.
ACCESSION   XM_039092824
VERSION     XM_039092824.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092824.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2505
                     /gene="Ccdc96"
                     /note="coiled-coil domain containing 96; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:289716"
                     /db_xref="RGD:1305153"
     CDS             185..2113
                     /gene="Ccdc96"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 96"
                     /protein_id="XP_038948752.1"
                     /db_xref="GeneID:289716"
                     /db_xref="RGD:1305153"
                     /translation="MDSQNGDTEGEGRAEEGLIRQPPEIKVSSEPLTPADPTEPEPEP
                     EPEPEPEPEPEPESGQEPEPEPEPEPEPEPEPEPEPEPEPEPEPEAEPEPEPEPEPEP
                     EPEPEPEPETQPVADSLKAEASDEHEYTPVEAPESPRDSEVAGEAVEAASEAVSQEPE
                     SLPQTKPKTEAEPKEPEDKDEDEDEDESDEDEDEDEDEDEELDKSEKKKGKREKTKES
                     RFRPSLPLTTIVEEAAAPAPRAAKEKAKGPQKRDSEEIEVIGGEPRKKSTEEHLQPGE
                     EKEEGEEKVEKVEKEADADEFEWSADVRKLQEQQLRGELVEQYHSLLVERNRYQRYNV
                     YLQQKIHETLRKKGLEAAAEPVDKGAEPESPEKEQAYLRYLAMLEELKKQEADDLEWY
                     RHEVRELKQQCQEKQAKVEKEWKRFQALKKQVVMQVMGSCRMRGGRQAALREVEQIQA
                     LEDKKEKEMSAVRLENVQLKQSLVHFETRMKAQEDLAEGLLLIDFEQLKIENQTFNEK
                     VEERNEELLKLRTKVTSNVQIITHVKEKLSFIDMENSCKKAQLSEVDAKVALGRDLLT
                     KTKQARDSLRTDNVKLSQKCGLLGKESLLRDLEEKVEKTELLNRRLESLKRHHAGLAL
                     SCKGVKQKIREAKSFLPS"
ORIGIN      
        1 agccagcgtc caattagcgc ctcccttcac ctgttcgcag atcttcattg gcctaatatt
       61 accgggaggt ggagagaaag gaaaagcaaa tgaccaatcg cggggcccac cgcgcgccct
      121 ggttgccccg ggaaacctaa cagcaggcat cagcggggct cagacccggg ccagcgggtc
      181 gaatatggac agccaaaacg gggacaccga gggcgaaggc cgagccgagg aaggcctgat
      241 caggcagccg cccgagatta aggttagctc cgaacctctg actccggcgg accctacgga
      301 gccggagccg gagccggagc cggagccgga gccggagccg gagccggagc cggagtcggg
      361 gcaggagccg gagccggagc cggagccgga gccggagccg gagccggagc cggagccgga
      421 gccggagccg gagccggagc cggagccgga ggctgagcct gagcctgagc ccgagcccga
      481 gcccgagccc gagcccgagc ccgagcccga gcccgagacc cagccggtgg cggacagctt
      541 aaaagcagag gcttcagacg agcatgaata cacgcctgtt gaggccccgg aaagtcccag
      601 ggactctgag gtcgcgggcg aggcagtaga ggctgcgagc gaggcggtat cccaagagcc
      661 agagagtctg ccacagacca agcccaagac cgaggcggag cccaaagagc cggaggacaa
      721 agacgaggac gaggatgagg atgagagcga cgaggacgag gatgaggacg aggacgagga
      781 cgaggaactc gacaagtcgg agaagaagaa ggggaagagg gagaagacga aggagtcacg
      841 gttccggccc tctctacctc tgaccacgat tgttgaggag gcggctgccc cagccccacg
      901 agctgcgaaa gagaaagcaa aggggccaca gaagagagac agtgaagaga tcgaggtgat
      961 aggtggagaa ccgcgcaaga aaagcacaga agagcatctt caacctggag aggagaagga
     1021 agaaggggaa gagaaagtag agaaagtaga gaaagaggcg gacgctgatg agtttgagtg
     1081 gtcggcggat gtgcggaagc tgcaagagca gcagctgcgg ggcgagctgg tagagcagta
     1141 tcactccctg ctggtggagc gtaaccgtta tcagcgctac aacgtttacc tacagcagaa
     1201 gattcatgag accctacgca agaagggtct ggaagcagca gcggaacctg tggacaaggg
     1261 cgctgaacca gaatctcctg agaaagagca agcatacttg cgctatctgg ccatgctgga
     1321 ggaactgaag aaacaagagg cagatgactt agagtggtac cgtcatgagg tgcgtgagct
     1381 gaagcagcag tgccaggaga agcaggccaa ggtggagaaa gagtggaagc gtttccaggc
     1441 cctcaagaag caggtggtga tgcaggtcat gggcagttgc cgcatgcgcg gtgggcgcca
     1501 ggctgctctg agagaggtgg aacagattca ggctctggag gataaaaagg agaaggagat
     1561 gagcgccgtg cgtctcgaga acgtgcagct gaagcagagc ctggtacact ttgaaaccag
     1621 gatgaaggcc caggaggact tggctgaggg gctgctcctc atcgactttg aacagctaaa
     1681 aattgagaac cagaccttca atgagaaagt agaggaacga aacgaggaac ttttaaaact
     1741 gcgtactaag gtgaccagca acgtccagat tataacacac gtgaaggaaa agctgtcttt
     1801 catagatatg gagaactcat gcaaaaaggc acaactttcg gaggtggatg ccaaggtggc
     1861 cctaggaaga gacctattga cgaagacaaa acaagcccga gacagcctgc gaaccgacaa
     1921 cgtcaagttg agtcagaaat gtgggcttct gggtaaggaa tcactgctcc gagacttgga
     1981 agaaaaggtg gagaagacag aattgcttaa taggcgcctg gaatccctga agcgccatca
     2041 cgccgggctc gccttgtcct gcaaaggggt gaagcaaaaa attagggaag ccaaatcgtt
     2101 ccttccctct tgacagtcct tgacaggaca gttggcaaaa tgtctgcaac tccagaaact
     2161 gtcccttact ctcttctgcc tcttgattgt cattctgtgg aacttggaat gcaacttttt
     2221 ggtctggctt ccagctttca aatttctgat gaacatatcc atctagcagt aggttctaca
     2281 tgaggttaag taaaatatat ctagagagtg gggtaattaa attgacttct gatgaaaagc
     2341 ctttatagcc aagtagcccc gtagtctaaa ggaactgttt cttgcctatg tctaaggatg
     2401 gcttaaaggt tcaacgagtg ggcaaggtac agaaaacctc tatgcactga tccgatgact
     2461 cagttgtctt tgtactaatt aaacttaaga gtatttaatc actga
//
