LOCUS       NM_001024997            2403 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 93 (Ccdc93), mRNA.
ACCESSION   NM_001024997 XM_222583
VERSION     NM_001024997.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   McNally,K.E., Faulkner,R., Steinberg,F., Gallon,M., Ghai,R.,
            Pim,D., Langton,P., Pearson,N., Danson,C.M., Nagele,H.,
            Morris,L.L., Singla,A., Overlee,B.L., Heesom,K.J., Sessions,R.,
            Banks,L., Collins,B.M., Berger,I., Billadeau,D.D., Burstein,E. and
            Cullen,P.J.
  TITLE     Retriever is a multiprotein complex for retromer-independent
            endosomal cargo recycling
  JOURNAL   Nat Cell Biol 19 (10), 1214-1225 (2017)
   PUBMED   28892079
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Phillips-Krawczak,C.A., Singla,A., Starokadomskyy,P., Deng,Z.,
            Osborne,D.G., Li,H., Dick,C.J., Gomez,T.S., Koenecke,M.,
            Zhang,J.S., Dai,H., Sifuentes-Dominguez,L.F., Geng,L.N.,
            Kaufmann,S.H., Hein,M.Y., Wallis,M., McGaughran,J., Gecz,J.,
            Sluis,Bv., Billadeau,D.D. and Burstein,E.
  TITLE     COMMD1 is linked to the WASH complex and regulates endosomal
            trafficking of the copper transporter ATP7A
  JOURNAL   Mol Biol Cell 26 (1), 91-103 (2015)
   PUBMED   25355947
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091337.1.
            
            On Jun 25, 2005 this sequence version replaced XM_222583.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091337.1, SRR8487231.4036.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q11"
     gene            1..2403
                     /gene="Ccdc93"
                     /note="coiled-coil domain containing 93"
                     /db_xref="GeneID:304743"
                     /db_xref="RGD:1560504"
     exon            1..180
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     CDS             139..2028
                     /gene="Ccdc93"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 93"
                     /protein_id="NP_001020168.1"
                     /db_xref="GeneID:304743"
                     /db_xref="RGD:1560504"
                     /translation="MGLPKGPEGQGLPEVETREDEEQNVKLTEILELLVAAGYFRARI
                     KGLSPFDKVVGGMTWCITTCSFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQ
                     LEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRSYSISQFQKTYSLPEDDDFIK
                     RKDKAIQTVVDLSDAYKPRRKYRRQQGAEELLDEESRVHSTLLEYGRRHGFSRQSKTE
                     KAEDKKTALAAGLSAAEKTDAHEEDELQAAEEQRIQSLMTKMTAMANEESRLTASSVG
                     QIVGLCSAEIKQIVSEYEGKQSELSAEESPEKLGTSQLHQRKVISLNKQILQKTKHLE
                     ELQANHTSLQAKYSDKKKTLTELKNHGEKLDQEQAALEKLEAKADPSILQNLRALVAM
                     NESLKSQEQEFKAHCREEMARLQQEIEILKAERAPGEKTISSGEPQGALTSTMTHNED
                     LDRRYNMEKEKLYKIRLLQARRNREIAILHRKIDEVPSRAELIQYQKRFIELYRQISA
                     VHKETKQFFTLYNTLDDKKVYLEKEISLLNSIHENFSQAMASPAARDQFLRQMEQIVE
                     GIKQSRMKMEKKKQENKMRRDQLNDQYLELLEKQRLYFKTVKEFKEEGRKNELLLSKI
                     KAKAS"
     exon            181..294
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            295..389
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            390..501
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            502..600
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            601..657
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            658..758
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            759..795
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            796..888
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            889..939
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1026
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..1143
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1144..1206
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1280
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1281..1362
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1363..1428
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..1482
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1483..1545
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1654
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1737
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1738..1775
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1860
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..1974
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
     exon            1975..2378
                     /gene="Ccdc93"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctccgcgggg ccacggttct ccgaccggct gtggtagtgt cagctcctgt gaaggaagtt
       61 tccgctttgc accccacccg gatcacagtc cggttatagg accggctccc ttcggttcca
      121 catcagcgca tccggatcat ggggttaccc aaggggccgg agggccaggg gctcccggag
      181 gtggaaacga gagaagacga agaacagaat gtcaagctga ctgaaatcct ggagctcttg
      241 gttgcggctg gctatttcag agcaagaatt aaaggcttgt ctcctttcga caaggtagta
      301 ggaggaatga cgtggtgtat caccacttgc agctttgatg tggatgtgga tttgctcttt
      361 caggaaaact ctacaatcgg tcagaaaata gctctgtcgg aaaagatcgt ctcggtcctc
      421 ccaaggatga agtgccccca ccagctggag ccccaccaga tccagggcat ggattttatc
      481 cacatcttcc ctgtcgtgca gtggctggtg aagcgagcta tagagacaaa ggaagagatg
      541 ggcgactaca tccgctccta ctccatctcc cagttccaga agacctacag cctcccggag
      601 gatgatgact tcataaagag aaaagacaaa gccatccaga cagtcgttga cctctcggat
      661 gcttacaagc cccggcgaaa gtacagacgg cagcagggag cagaggagct actggacgag
      721 gagtcccggg tccactccac gcttctggaa tatggcagga gacacggctt tagtcgtcag
      781 agcaagacag agaaggctga ggacaagaaa acagcgcttg ctgcggggct ctcagctgca
      841 gagaaaacgg atgctcacga ggaagatgag cttcaagcag ctgaggagca acgaattcag
      901 tcactgatga ccaagatgac cgccatggca aatgaggaga gccgtctcac cgcaagctcc
      961 gtgggccaga tcgtgggtct ctgctccgcc gagatcaaac agattgtgtc tgagtacgaa
     1021 gggaagcagt ctgagctgtc cgctgaagaa agtccagaga aattaggaac ctcccaactg
     1081 catcagcgga aggtcatttc cttgaataaa cagattctgc agaagaccaa acatctagaa
     1141 gagctgcaag cgaatcatac cagcctccaa gccaagtaca gcgacaagaa gaagacgctg
     1201 acagagctga agaatcacgg tgagaaacta gaccaagagc aggcagccct ggagaagtta
     1261 gaagccaaag ccgacccgag cattctgcag aacctgagag cactcgtcgc catgaatgaa
     1321 agtctgaaaa gccaggaaca ggagtttaaa gcgcactgcc gggaggagat ggctcggctc
     1381 caacaggaaa ttgagatcct gaaagccgag agagcgccag gcgagaagac tatctccagc
     1441 ggagagccgc agggtgccct gacctccacc atgactcaca atgaggacct ggacagacgg
     1501 tacaacatgg aaaaagagaa gctgtacaag atccggttac tacaggcaag aagaaatcga
     1561 gaaatagcga ttttgcaccg caagattgat gaagtgccca gtcgagcaga gctgatacag
     1621 tatcagaagc gatttattga gctctaccgt cagatttccg cggtgcacaa ggagaccaag
     1681 cagttcttca ctttgtacaa taccctggat gacaaaaagg tttatctaga aaaggagatt
     1741 agcctgctaa actcaattca tgagaacttc tcacaagcca tggcctcccc tgctgcccgg
     1801 gaccagtttt taaggcagat ggaacagatc gtcgaaggca ttaaacaaag caggatgaag
     1861 atggaaaaga agaagcagga gaacaagatg agaagggacc agttgaacga tcagtacttg
     1921 gagctcctgg aaaagcagcg gctctacttc aagactgtaa aagagttcaa agaggagggc
     1981 cgaaagaatg agctattact gtctaagatc aaagccaagg cctcctgaaa aatcctcctc
     2041 catttcggta tgacattgat atttttttaa tgacgtgtat agactacggg atcttgagat
     2101 ggttctgcag atgatggcgg agaggtgcag gaggattgat ttcagctctg cagacggatg
     2161 ttctctttct cctacttgtt tcatttccat ctcttctggc tacggctgat ggactcagag
     2221 taacaccatg gtgtggatga cacatagaaa cctacgaaga agcgtgggca gtgcccactc
     2281 tctcagtcca ttcaacttct atttcttcag tgacattgca tttatgaagg tacccggatg
     2341 tgtgaggccc tgaaaataaa gagctttatg ttcagcaaaa aaaaaaaaaa aaaaaaaaaa
     2401 aaa
//
