LOCUS       NM_001401581            2193 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 9 (Ccdc9), mRNA.
ACCESSION   NM_001401581 XM_039100823
VERSION     NM_001401581.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 16, 2022 this sequence version replaced XM_039100823.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-81                JAXUCZ010000001.1  86119706-86119786   c
            82-133              JAXUCZ010000001.1  86117727-86117778   c
            134-238             JAXUCZ010000001.1  86117494-86117598   c
            239-337             JAXUCZ010000001.1  86115843-86115941   c
            338-586             JAXUCZ010000001.1  86115449-86115697   c
            587-670             JAXUCZ010000001.1  86113769-86113852   c
            671-844             JAXUCZ010000001.1  86113513-86113686   c
            845-1026            JAXUCZ010000001.1  86111299-86111480   c
            1027-1073           JAXUCZ010000001.1  86109745-86109791   c
            1074-1209           JAXUCZ010000001.1  86109511-86109646   c
            1210-1303           JAXUCZ010000001.1  86109215-86109308   c
            1304-1679           JAXUCZ010000001.1  86108742-86109117   c
            1680-1796           JAXUCZ010000001.1  86108250-86108366   c
            1797-2193           JAXUCZ010000001.1  86107037-86107433   c
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2193
                     /gene="Ccdc9"
                     /note="coiled-coil domain containing 9"
                     /db_xref="GeneID:684934"
                     /db_xref="RGD:1584422"
     exon            1..81
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            82..133
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..1903
                     /gene="Ccdc9"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 9"
                     /protein_id="NP_001388510.1"
                     /db_xref="GeneID:684934"
                     /db_xref="RGD:1584422"
                     /translation="MATTLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKK
                     AELEGVAVTAPRKSRSMEKENMAVEEKNLGPSRRTPGTPRPPGASRGGRTHPQQGGRA
                     GVGRASRGWEDGAGEQLRGGTGGRGRRGRGRGSPHLLGAGDNSTSDRKSKEWEERRRQ
                     NIEKMNEEMERIAEYERNQREGVLEPNPVRNFLDDPRRRGGPLEESERDRREGSRRHG
                     RNWGGSDFERVRSGLEQERQGRRAGLGSGGDMTMSMTGRERSEYLRWKQEREKIDQER
                     LQRHRKPTGQWRREWDAEKTDGMFKDGPAPTHEPSHRYDDQAWARPPKPPTFGEFLSQ
                     HKAEVNSRRRRKNSRPQAKVAPRAYSDHDNRWETKEEAVSPAPKSSQSMSLEETPTQQ
                     PPETPAPAHRPPEEDGEEDVGEEEEGEEEGEDDDEDEEWEDVSEDVTEEEEEEEEEFE
                     EEEESPKEQEAAAVPDHQPEAEPAGKPTCEQVDPVPAGPQELLSPVPVEPPSPFSPSE
                     DHQPVSDWGGDQPALASLESRPTLAGTLKSEEEGSEASPGGMHEAGGEVVGPEGQETA
                     EITDFQRVRFCKVVAAAPPPGAAR"
     exon            134..238
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            239..337
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            338..586
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            587..670
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            671..844
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            845..1026
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..1073
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1209
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1303
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1679
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1680..1796
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1797..2193
                     /gene="Ccdc9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgacgcgt gaggcccggg agctgcggac gcgaaggcgg acggagccgg agtcgcagac
       61 accgcggggt ctccgggaca ggagctccca gtgctacatg tgttttctgt gaggaagatc
      121 acagccaaag atggctacta cactagattt gaaatcaaag gaggaaaagg acgcggagtt
      181 ggacaagagg attgaggctc ttcgccggaa gaatgaggcc ctcatccggc gctaccagga
      241 gattgaggag gatcggaaaa aagctgaact ggagggtgtg gcagtgacgg ccccccggaa
      301 gagccgttcc atggagaagg agaatatggc agtggaggag aagaacctgg gtccctctcg
      361 gaggactcct gggactcctc ggcccccagg ggccagcaga gggggccgga cccatcccca
      421 gcagggaggc cgggcaggcg taggccgggc atcccgaggc tgggaggatg gtgctgggga
      481 gcagcttcga gggggtactg ggggccgggg ccggaggggc cggggccggg gatcccctca
      541 tctcttaggg gcaggagaca actcaacctc tgaccgcaag tccaaggagt gggaggagcg
      601 gcgcaggcag aacatcgaga agatgaatga ggagatggag aggatcgcgg aatacgagcg
      661 taaccagcgg gaaggggtgc tggagcccaa cccagtacgc aactttctgg atgacccccg
      721 acgccgcggt gggccccttg aggagtccga gagggatcgc cgggaaggca gccgccggca
      781 tggacgcaac tggggaggtt cggattttga gcgggtgcgc tctggcttgg aacaggagcg
      841 acagggtcgc agggctggcc tgggcagtgg gggcgacatg acaatgtcca tgacgggccg
      901 ggagcggtca gaatacctgc gctggaagca ggagagggag aagatcgacc aagagcgtct
      961 gcagcgacac cgcaagccca ctgggcagtg gcggcgggag tgggatgctg agaagactga
     1021 tggcatgttc aaggatggcc cagcccctac ccacgaaccg tcccaccgct atgatgatca
     1081 agcttgggca agacctccta agccccccac ttttggagag ttcctttctc agcataaagc
     1141 tgaagtcaac agccgtagga ggagaaagaa cagccgacct caggccaagg tggcccctcg
     1201 tgcctatagt gaccatgata accgttggga gacaaaagag gaagctgtgt ccccagctcc
     1261 caaatcctct cagtccatgt ccctggagga gacacccaca cagcagcctc ctgagacccc
     1321 agctccagcc caccggcctc ctgaggagga tggtgaggaa gatgtgggag aagaggagga
     1381 gggagaagaa gagggggaag atgatgatga ggatgaagaa tgggaggatg tgagtgaaga
     1441 tgttactgag gaggaggagg aggaagaaga agagtttgaa gaggaggaag agagtcccaa
     1501 ggagcaggaa gcagcagctg ttcctgatca ccagcctgag gctgagcctg ctgggaagcc
     1561 cacctgtgag caggtggacc ccgtgcctgc tgggccccag gagttgctgt ccccagtccc
     1621 cgttgaacct cccagcccct tctcaccctc tgaggaccac cagcctgtgt ctgactgggg
     1681 aggtgaccag ccagcccttg cctccttgga gagcaggccc accttggcag gaaccctgaa
     1741 gtctgaagaa gaggggtctg aggcatctcc aggtgggatg catgaggctg gtggagaggt
     1801 ggtgggccct gagggccagg agacggcaga gatcacagac ttccagaggg tgcgtttctg
     1861 caaggtggtg gcagctgctc caccgccggg ggctgcccgc tgacagcgcc agcagaccag
     1921 ggcgcctcgc tctgcactaa ccttcagctc ctctgcttct gctacactct gtacaggaca
     1981 gggttaaact taggggggag gaagcaggtt agcaacaagc ccggacccga ggggtgtctt
     2041 ctaaatttgc tgaggaacca acggggccag tcatacggta cccgtctagc cgaggcttcc
     2101 aagtcagtcc ctgtgaggcc tgggtgcgca ggaacctgca gccagggccg gaggctctct
     2161 agaggacttg aattaaacgc gtgctaccgc caa
//
