LOCUS       XM_343096               7575 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 88C
            (Ccdc88c), transcript variant X1, mRNA.
ACCESSION   XM_343096
VERSION     XM_343096.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_343096.9.
            
            On Jan 21, 2021 this sequence version replaced XM_343096.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7575
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7575
                     /gene="Ccdc88c"
                     /note="coiled-coil domain containing 88C; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     84 samples with support for all annotated introns"
                     /db_xref="GeneID:362770"
                     /db_xref="RGD:1307429"
     CDS             347..6385
                     /gene="Ccdc88c"
                     /codon_start=1
                     /product="protein Daple isoform X1"
                     /protein_id="XP_343097.4"
                     /db_xref="GeneID:362770"
                     /db_xref="RGD:1307429"
                     /translation="MDVTVSQLVELFLQSPLVTWVKTFGPFGSGHQDNLTLYMDLVDG
                     IFLNQIMLQIDPRPSNQRINKHVNNDVNLRIQNLSILVRNIKTYYQEVLQQLIVMNLP
                     NVLMIGKDPLSGKSMEEIKKVLLLVLGCAVQCERKEEFIERIKQLDIETQAGIVAHIQ
                     EVTHNQENVFDLQWLDLPDVAPEELEALSRNMVFHLRRLIDERDECTELIVDLTQERD
                     YLQAQHPPSPGKFSSPDSTPSPTSSLSSEDKQHLAVELADTKARLRRVRQELEEKTEQ
                     LADTRHEVDQLVLELQKAKQDNIQLAADARSARAYRDELDSLREKANRVERLEMELVR
                     CKEKLHDVDFYKARMEELREDNIILIETKAMLEEQLTASRARSDKVHELEKENLQLKS
                     KLHDLELDRDTDKKRIEELLEENMVLEIAQKQSMNESAHLGWELEQLSKNADLSDASR
                     KSFVFELNECASSRILKLEKENQSLQSTIQGLRDASLALEESSLKCGELEKENQQLSK
                     KIEKLQTQLEREKQSNQDLETLSEELIREKEQLQSGMEALKADRARQIKDLEQEKGHL
                     HQAVWSLRERPQVNSMKDVEKENRTLHQAVTEAGSKLSQLESEKKQLHRDLEEAKEKG
                     ERAEVLEKELHRLEKENEQLTKKVTSLKTVTEKVEALEHESQGLELENRTLRKSLDTL
                     QNVSVQLEGLERDNKQLDQENRELRKMVEAMRFTSAKMAQMETENQQLEREKEELRRN
                     VEMLKTLSKKSERLEHSYQSVSAENLQLQHSLESSNHKSQALQRELSELEAERQALKR
                     DLETLQLANKQLEGAEKDRKALEQEVAQLEKDKKLLEKETRRLWQQVELKDAVLDDSA
                     AKLSAAEKESRALDKELARCRDAASKLKELEKDNRDLTKQVTVHTRTLTTLREDLVLE
                     KLKSQQLTSELDKLSQELEKVGLSKELLLQEDNSHGDTKGKIWESKNESSLKTTLAMK
                     EEKIVFLEAQVEEKESLNHQLQIELQMVKKECEQLRKTQEDGTQAQNVQKHAPDKVTS
                     HQEKEAWGPSHKEATMELLRVKDRAIELERSNAALQAERQLLKEQLQHLETQNVSFSS
                     QILTLQKQSAFLQEHTTTLQTQTAKLQVENSTLSSQNAALSAQYTMLQSQHAAKEAEH
                     ESLQQQQEELAAVYEALLRDHDRLGALYERQSSEYEALICQHSCLKTLHRNLELEHKE
                     LGERHGDLQKRKAELEELEKALSTEREVLQQEQRTSAIATSENQRLRGELDRISFLHH
                     QLKGEYEELHAHTKELKTSLNNSRLELNRWQARFDELKEQHQNMDISLTKLDNHCELL
                     SRLKGNLEEENQHLLSQIQLLSQQNQMLLEQNIESKEQYHEEQKQYIDKLNALRRHKE
                     KLEEKIMDQYKFYDPAPKKKNHWIGAKALVKLIKPKKEGSRERLKSSDSPPWQLESSD
                     PASPPASQTLRPQTENSDNPPSGSNCTEERDTHNGPVGKGPGDLKPKRGSPRGGTVDR
                     TDTSTDPAVKSWPSEPGSRSFSTSATTAALSSSTPILKHLGRTKGCNSDDNLCEPSPE
                     PEGPYHRQQVSRPNSLESSRSTSSNSSPLSLKGSSDHLHSRCESFSSADLIPSRDPTT
                     LSRDGSTPGRGLLGRHEYPPPRNGPVPQENIQKKGAASAHTGVRPHSASPSSEMVTLE
                     EFLEESNRGSPTHDTPSCRDDLLSDYFRKAHDPPAMGGQPGPPTRKEGAKMPTSFVAP
                     TVKMPVSTSEGQQLKPGHYVKPNLRPSEAEALAGIPSRQVQPPQSLSLGRPRQATMSQ
                     TCHVPVSRSASLSRAFSLASADLLRASGPEACRPESPQKPGCPEAVGTRETSGHSLQG
                     SHILPRERTPIVGKADSSSPGPGTRGRPLDTRRFSLAPPKEERLAPLQQSATAPALAT
                     GCGSGSNPQIQHFSPTVAPAVRTKPKGPQHSGEVATVAPVRPGLGTSEGDGGPGHGYS
                     EGLLTKSPGRSSDLAPHVKRGPDDFSQGSSSKSTPASPEPGGDPQTVWYEYGCV"
ORIGIN      
        1 ctgaggataa cactgagcct cttcctcccc ggcccaggtc tgcgcgcgca ggctgcacct
       61 gcccgcgcac ccgggccgcc acgtgctgtg gccccgcccc gctccagtcc tcgctccccc
      121 acgcgttccc cgccccgtgc ggctccgctc cgctaggctg cgcagggcac cgggcgaccg
      181 agaagggacc gcgtcgcctc tccctccccc tactcgcccc caccctctcg ctctcccccg
      241 gcgggcgggg ccgcagccgc gcaccgtggg ctcgcgcccc gcctttgtct cccgcgctcg
      301 ctgccggctg ccagagccgc tttgtgcggc gcggccgcgg ctcagcatgg acgtgacggt
      361 gtcgcagctc gttgagctgt ttctgcagag tccgctggtg acctgggtga aaacttttgg
      421 cccgtttgga agtggccacc aggacaactt gactctgtac atggatttag tggacggcat
      481 ctttttgaac caaatcatgt tgcaaataga ccccaggcca agcaaccagc gtatcaacaa
      541 gcacgtcaac aatgacgtca acctgcgcat tcaaaacctg agtatcctgg tgaggaacat
      601 caagacctac taccaggaag ttctccagca gctgatcgta atgaacttgc ccaatgtttt
      661 gatgattggc aaagacccac tgtctgggaa gagcatggag gagattaaga aggtgctgct
      721 gctggtgctg ggctgtgctg ttcagtgtga gagaaaagag gaattcattg agagaatcaa
      781 acagctggac atcgagaccc aggctggcat tgtggctcat atccaggagg tgacccacaa
      841 ccaggagaat gtgtttgacc tgcagtggct ggacttacct gatgtggccc cagaggagct
      901 ggaggccctc tcgagaaaca tggtgttcca cctccgcaga ctcatcgatg agcgtgacga
      961 gtgtactgag ctgatcgtgg acctgacaca agagagagac tacctccagg cacagcaccc
     1021 tcccagccct ggcaagttct ctagtccgga ctccacacca agccccacca gcagcctgtc
     1081 cagtgaggac aagcagcacc tggctgtgga gctggctgac accaaggcca ggctgcggcg
     1141 cgtccggcag gagctggagg agaagacaga gcagcttgca gacaccagac acgaggtgga
     1201 tcagctggtc ctggagcttc agaaggccaa gcaagacaat attcagcttg cagctgatgc
     1261 ccggtcagcc cgggcctatc gggatgagct ggactcgctg agggaaaagg cgaaccgtgt
     1321 ggagaggctg gagatggagc tggtacgctg caaggagaag ctgcacgatg tcgacttcta
     1381 caaggctcgc atggaggaac tgagagaaga taacatcatc ttaatcgaga cgaaggccat
     1441 gttggaggaa caactgactg cctcccgggc tcgcagcgat aaagtccacg agctggagaa
     1501 agagaaccta cagctgaaat ctaaactcca tgacttggaa ctggatcggg acactgacaa
     1561 gaaacggatt gaggagctgc tggaagaaaa catggttctg gagatcgcac agaagcagag
     1621 catgaacgag tcggcccacc tgggctggga gctggaacag ctgtccaaga acgcggactt
     1681 gtccgacgcc tccaggaaat ccttcgtgtt tgagctgaat gagtgcgcct ccagccgcat
     1741 cctgaagctg gagaaggaga accagagcct ccagagcacc atccagggtc tgcgggatgc
     1801 gtcgctggcg ctcgaggaga gcagcctcaa gtgtggggag ctggagaagg agaaccagca
     1861 gcttagcaag aagattgaaa agttacaaac gcagctggag agagaaaagc agagtaacca
     1921 agacctggag acactgagtg aggagctgat tcgagagaag gaacagctgc agagtggcat
     1981 ggaggccctg aaggcggaca gggccaggca gataaaagat ctggagcagg agaagggcca
     2041 cctccaccaa gctgtgtggt cactgcggga gagaccgcaa gtcaacagca tgaaggatgt
     2101 ggagaaggaa aacagaaccc ttcaccaggc tgtgaccgag gcaggcagca agctcagcca
     2161 gctggagtcg gagaagaagc agctgcaccg agacttggag gaggccaagg agaagggaga
     2221 gcgcgcagag gtgctggaga aggagctgca ccggctggag aaagagaacg agcagctgac
     2281 caagaaggtg acctccctga agacggtcac tgaaaaggtc gaggccctgg agcatgagag
     2341 ccagggtctg gagctggaaa accggacgct gagaaagtcc ttggacaccc tgcagaacgt
     2401 gtctgtgcag ctcgagggcc tggagaggga caacaagcag ctggatcagg agaaccggga
     2461 gctgcgcaag atggtggagg ccatgcgctt caccagcgcc aagatggcgc agatggagac
     2521 ggagaaccag cagctggaga gggagaagga ggagctgcgc aggaatgtgg agatgctgaa
     2581 gaccttaagc aagaagtcgg agcgcctgga gcacagctac cagagcgtga gtgctgagaa
     2641 cctgcagctg cagcacagcc tggagagcag caaccacaag tctcaggccc tgcagaggga
     2701 gctgagcgag ctggaggctg agcgccaggc cctgaagcga gacctagaaa ctctgcagct
     2761 cgccaacaaa cagctcgagg gggctgagaa agacaggaag gccctggagc aggaggtggc
     2821 ccagctggag aaggacaaga aactgctgga gaaagagacc agacgcctat ggcagcaggt
     2881 ggagctcaag gacgctgtcc tggatgacag tgcggccaag ctgtcggcgg ccgagaagga
     2941 aagccgcgcg ctggacaagg agctggcccg ctgccgggat gcggccagca agctgaagga
     3001 gctggagaag gacaacaggg acctcaccaa gcaggtcacc gtgcacacga ggacgctcac
     3061 caccctgaga gaggacctgg tgctggagaa actgaagagc cagcagctga ccagcgagct
     3121 ggacaaactg agccaggagc tggagaaggt cggcctcagc aaggagctgc tgctgcagga
     3181 ggataacagt catggtgaca caaaaggcaa gatttgggaa agcaaaaacg aatcctcatt
     3241 gaaaacaaca ctagctatga aagaagaaaa gattgtgttt ttggaggcac aagtggaaga
     3301 gaaagagagc ttgaatcacc aactccagat cgagctgcag atggtaaaga aagaatgtga
     3361 gcagctcagg aagacccagg aggatggaac ccaggcgcag aacgtgcaga agcacgctcc
     3421 agacaaggtc accagtcacc aagagaagga ggcctgggga cccagccaca aagaggccac
     3481 catggagcta ctccgtgtga aggaccgggc catcgagctg gagcgcagta acgcagctct
     3541 tcaggcggag aggcagttgc tgaaggagca gctgcagcac ctggagactc agaacgtgtc
     3601 cttcagcagc cagatcctga cgctacagaa gcagagcgcc ttcctacaag agcacaccac
     3661 cacgctgcag acgcagactg caaagctgca ggtggagaat tccacactga gctcccagaa
     3721 tgcagcgctc agtgcacagt acaccatgct acagagccag cacgccgcca aggaggcgga
     3781 acacgagagt ctgcagcagc agcaggagga gctggcggct gtctatgaag ccttgcttcg
     3841 ggaccacgac cgcctgggtg ccctgtacga gcgccagtcc tcagagtacg aggccctcat
     3901 ctgccagcac agctgtctga agacgttgca caggaacctg gagctggaac acaaggagct
     3961 tggagagagg cacggagact tacagaagcg taaggcagaa ctggaggagc tggaaaaagc
     4021 cctgagcact gagcgggagg ttctgcagca ggaacagagg accagtgcca tcgccacgag
     4081 cgagaaccag aggctgcgag gagagctgga caggatcagt ttcctgcacc accagctgaa
     4141 gggggaatat gaggagctgc acgcccacac caaggagttg aaaacctcgc tgaacaactc
     4201 tcggctggag ctgaaccgct ggcaggcacg ctttgacgag ctgaaagagc agcaccagaa
     4261 catggacatc tctctgacca agctggacaa ccactgtgag ctgctctccc gtctcaaggg
     4321 gaacttagag gaggagaatc agcacctgct gagccagatc cagctgctga gccagcagaa
     4381 ccagatgctt ctagaacaga acatagagag caaggagcag taccacgagg aacagaagca
     4441 gtacatagac aagttaaacg ccttacggag acacaaggaa aaactggaag aaaaaatcat
     4501 ggatcagtac aagttctatg accctgctcc aaagaagaag aaccactgga tcggagccaa
     4561 agccctagtc aaacttatca agccaaagaa agaaggctcc agagaacggt taaaatcctc
     4621 ggatagcccc ccctggcagc tagagtcctc agaccccgcc tcaccacctg cctcccagac
     4681 cctcagacca cagacggaga actctgacaa ccccccatcg ggctcaaact gcacagaaga
     4741 gagagacacc cacaacgggc ctgtggggaa aggccccggg gatctaaaac caaaacgagg
     4801 gtccccacgt ggaggcactg ttgaccgcac ggacacctcc actgacccag ctgtgaagtc
     4861 ctggccctca gagcctggct cccggagttt ttcgacctca gccaccacgg cagccctttc
     4921 tagctccact cctatcctta aacacctagg ccgcaccaaa ggttgtaact cagatgacaa
     4981 cctctgcgag ccatcccccg agcccgaggg cccctaccac aggcagcagg tgtctcggcc
     5041 aaacagcttg gagagcagca ggagcacatc cagcaacagc tcgcctttga gcctcaaggg
     5101 ttcctccgac catctgcaca gccggtgtga gagcttcagc agtgcagacc tgatccccag
     5161 cagggaccct accacactgt cccgggatgg cagcacccca ggacgtggtc ttctcggccg
     5221 ccatgagtac cctccacccc ggaatgggcc tgtcccccag gagaatatcc agaagaaggg
     5281 tgcagcttca gcccacactg gggtgcgacc ccactcagcc tctcccagca gtgagatggt
     5341 caccttggag gaatttttag aggagagtaa ccgtggctct cctacccatg atacgcccag
     5401 ctgccgtgat gacctgctta gtgactactt ccgaaaggcc catgatcccc cagccatggg
     5461 aggccagcca ggaccaccaa ctaggaaaga aggagccaag atgcccacca gcttcgtggc
     5521 tcccaccgtc aagatgccag tcagcacctc tgaggggcag cagctgaagc cagggcatta
     5581 tgtaaagccc aacctgagac catctgaagc cgaggctctg gctgggatcc cttcaagaca
     5641 ggtccagcct ccccagagcc tgtctctggg tagacccagg caagccacaa tgtcccaaac
     5701 ttgtcacgtg cctgtcagcc gaagtgcgtc tctgagcaga gctttcagcc tggcttcagc
     5761 tgacctcctc agggccagtg ggccagaagc ctgcaggcca gagtctcctc agaagccagg
     5821 gtgtcctgag gctgtaggaa ccagagagac aagcggccac agcctgcaag gctcccatat
     5881 cctaccccgg gagaggactc caatcgtagg aaaagctgac agttcctctc caggcccagg
     5941 cacccgagga cggccactgg acacaaggcg cttctccctg gctcccccga aggaagagag
     6001 gctggccccc ctacagcagt ctgccacagc cccagccctt gctactggat gtggcagtgg
     6061 tagcaacccc cagatccagc acttttctcc cactgtggct cctgcggtca ggacaaaacc
     6121 caaagggcca cagcactcag gggaggtggc cactgtagct cctgtgcgtc cagggcttgg
     6181 cacctcagag ggagatgggg gcccagggca tggttacagc gaggggctcc tcaccaaaag
     6241 ccctggtagg tcttctgact tggctcccca tgtcaaaagg ggccctgatg acttcagtca
     6301 agggagcagc tcaaagagca caccagcatc cccagagccg ggtggggacc cacagacagt
     6361 gtggtatgaa tacggttgtg tgtgactcac gtggcggatc tgcagcttgc aaacgctagg
     6421 ctgctggtta tgccttctga ttacaacggc cttttcccct gctggcctgt ggtgttgggg
     6481 gagggggtat agaatgagga gtggggttcc cgcacactca tccgattggc tgatggaaac
     6541 accgtgccaa gccctaagag gattgccctc cagggtctgt aacttctata gctgcagctc
     6601 ccagcagctg gtatcttacg gacaaatcag tttagcatgg ggaccgctta ggagtcagtg
     6661 gcacaacgaa tttacccaga aacagacact acttgagtag gaatactcct ctgcaacctg
     6721 tcgacctcca ctaaagagcg agtgcacgtg tgaatacaca cacatgtact aggctcacaa
     6781 agctaagccc tggtgggtct ggaaaccact cctgcctaaa agccattggt cctaggaaaa
     6841 tcttactctg ggaaaggatt tgcagagtag ggggaaagcc tgcagcaggg ctggctgtta
     6901 aacccaggac cgcctgccat cccattcctg aggtccaagc acttcccttt acagcagacc
     6961 aagctttagg atcagccaca gggtgcttgg tagctggctc atgggccctg cctagtagac
     7021 gttaaggctg cctaggaacc agccttttgg gacttcctag actactttac tacaaacact
     7081 ggatctgcca ggccttgact gtgaggcagt gagccctgag tgtcccaggc tggcaggagt
     7141 agttactaca cagaaggaag gccaaagcca cattcacctg gtaatgtggc ggctgcaccc
     7201 agccttcctt ggctcagacg gaactttttt tttttctgaa taactttttg ggggtagaaa
     7261 ccaaatttct ttaatatata tatacacata tggataacta tgtatacaca ctttgggggc
     7321 ctatttatgt tccattgtaa gtcattcttt gtctgtctgg tctgcttcct gatgtgtttt
     7381 gtttcctatt gtaatggtgc ttttcctggg atggactaaa cggtttattt tctgttctga
     7441 ttaatgtgct gagaaagaaa cgggagacct tgaatgttga caggatccat ggtgagggtg
     7501 tttgggttat gtgttaaata gccattcgtt ctggaagacc aggacggggc cataataaag
     7561 tggaaaggac tgtga
//
