LOCUS       XM_215206               4935 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 88B
            (Ccdc88b), transcript variant X1, mRNA.
ACCESSION   XM_215206
VERSION     XM_215206.11
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_215206.12.
            
            On Jan 21, 2021 this sequence version replaced XM_215206.10.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4935
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4935
                     /gene="Ccdc88b"
                     /note="coiled-coil domain containing 88B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 91 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:293698"
                     /db_xref="RGD:1311475"
     CDS             88..4518
                     /gene="Ccdc88b"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 88B
                     isoform X1"
                     /protein_id="XP_215206.6"
                     /db_xref="GeneID:293698"
                     /db_xref="RGD:1311475"
                     /translation="MEGAKGPRLRDFLSGSLATWALGLAGLVGEAEESSGTEEEEEEE
                     EEGPLCTERRFLKLISGDLLLRVLGIIAPSSRGRLQMVKGHDGPAACRIWNLYHLWGR
                     LRDFYQEELQLLILSPPPDLQTLGFDPFSEEAVDELEGILRLLLGASVQCEHRELFIR
                     HIQGLSLDVQSELAAAIQEVTQPGAGVVLALTGPESAELVAEELEMQLRNLMGTMSRL
                     VRERDLGAQRLAEVLLEREPAHLLLPEASANASAEGPSHHLALQLTNAKAQLRRLRQE
                     VEEKAELLLDSQAEVQGLESEIRRLRQETQALSGQAKRAELYREEAEALRERAGRLPR
                     LQEELRRCRERLHAAEVFKGQLEEERVLSGALEASKVLLEEQLEIARERSARLHETQR
                     ENLLLRTRLGEAHADLDSLRHQLEQLVEENVELELELQRSLEPPPGSPGETSLPGAAP
                     SLQDEVREAEAGRLRTVEQENRTLRGQLQMLREQLDSQRPLLEEQSKDSMLPVTNGAP
                     AAPLALDHSPKSLACQIGGEGPGSLDLPSPASYSGITRLSECLQAPDSHPELDSPFQM
                     VSQDPQTSDQTQESDPTGEAHQSLEKSGHRVSVQSPIVWDPPQGAEIRIDVQELGETG
                     SREASEGESVPEAQVLKQENPECRPRSAEFILLEPLKDQKTLEPELELSKQQTETGGH
                     EQRPKGLVNKLVLQKPQQTSEGPPDAWSREEPIPGETLATAIPEEQALRDEVAQLRRE
                     VVSLEAKLQAQAQRLEARSAEAVSLSEELAQARRTEAEAHLEVEARAREQARLREAVD
                     AASLELEAASREREALAEALAAAGRERRQWEREGPRLRAQVEAAEQQVQALESQVRCH
                     LEEAEREHLEKQALREELEKAVVRGQELGDRLEHLQRELEQAALERQKFLQERESQHQ
                     RYQHLEQRLEAELQAASTNKEEALMKLKARALQLEEELIQLRQYPVDQATEVRAEPRT
                     VETQNGRLIEVERNNATLVAEKAALQGQLQHLEGQLGSLQGRAQELLLQSQRAQEHSS
                     RLQAEKSMMEIQGQELHRKLGVLEEEVRVARRAQEETRGQQQALLRDHEALVQLQRRQ
                     ETELEGLLVRHRDLKANMRALELAHRELQGRHEQLQAQRASVEAQEVALLAERERLMQ
                     DGHRQRGLEEELRRLQNEHDRAQMLLAEVSRERGELQGERGELRSRLARLELERAQLE
                     IQSQKLRESNQQLDLSACRLTTQCELLTQLRSAQEEENRQLLAEVQALSRENRELLER
                     SLESRDHLHREQREYLDQLNALRREKQKLVEKIMDQYRVLEPGPLPRTKKGSWLADKV
                     KRLIRPRREGALHGGPRLGADGAGSTESLGGPLETELPEGREADGTGSSSPAPMRRAQ
                     SSLCLGDENLAGGQRRRLSSRFPAGRSSASFSPGDTPRQRFRQRRPGPLGAPSSHSKG
                     SGVEWDGSIETLSEHEADATGEALQEQKPEKQFLTSSLSQ"
ORIGIN      
        1 tgggatcccc cagccaggga cttcctcttc ctctcagagc aggtgtagct gccacagcgt
       61 gacagggact acaccctgtc ccccaacatg gagggggcca aggggcccag gctcagagac
      121 ttcctgagtg ggagtctggc cacctgggca ctgggattgg ctgggctggt gggggaggca
      181 gaagaatcat cggggacaga ggaggaagag gaggaggagg aggaggggcc tctttgtacg
      241 gagaggagat tcctgaagct gatcagtgga gacttactcc ttcgggtgct gggcatcatt
      301 gctcccagtt cccgaggacg acttcagatg gtcaaggggc atgatggtcc tgcagcctgt
      361 aggatatgga acctctatca cctgtggggg cgactgaggg atttctatca ggaggaactg
      421 cagctgctga tcctgtcacc acctccagac cttcagacac tgggatttga ccccttctca
      481 gaagaggcag tggacgagct ggaaggcatc cttcggctgt tgctgggggc ctcagtgcag
      541 tgtgaacatc gggagctctt catccgtcat atccagggcc tcagccttga cgtccagagc
      601 gagctggctg ctgccatcca ggaggtgacc cagcctggtg ctggtgtggt actggctctg
      661 actggaccag aatctgcaga gctggtggct gaggagctgg agatgcagtt acggaatctg
      721 atggggacga tgtccaggct ggtgcgagag cgtgatctgg gggcacagcg gttggctgaa
      781 gtactgctag agcgggagcc agcccacttg ctgttgccag aggcttctgc taatgcttct
      841 gcggagggtc cctcgcacca tttggctctg cagttgacca atgccaaggc ccagctgaga
      901 cgcctgcggc aggaggtgga ggagaaggcc gagctgctgc tggactccca ggctgaggtg
      961 cagggcttgg aatctgaaat tcgaaggctc cgccaggaga cccaggcgct gtctggacaa
     1021 gccaagcgcg cagagctcta ccgcgaggag gcagaggcac tgcgggagcg ggccggccgc
     1081 ttgccacgcc tgcaggaaga gttgcggcgc tgtcgcgaga ggcttcacgc agcagaggtc
     1141 tttaagggcc agctagagga ggagcgagtg ctttctgggg ccctggaggc ctcgaaggtc
     1201 ctgctggagg agcagctgga gattgcccga gaacgctcag ccaggctgca cgagacccag
     1261 cgggagaacc tcctgttgcg tactcggctg ggcgaggccc atgcggacct ggactctctg
     1321 cggcatcagt tggagcagct ggtggaagag aatgtggaac tggaactgga acttcagagg
     1381 agcctggagc cgcccccagg ctcccctggg gagacttccc taccgggagc agcaccctca
     1441 ctgcaagatg aggtgaggga agcagaggct gggcggctaa ggacagtgga acaggagaat
     1501 cggacgcttc gaggccaact acaaatgctt cgggaacagc ttgacagtca gcgccctctg
     1561 ctggaggagc agagcaagga ctccatgctg cctgtgacta atggggctcc agcagctccc
     1621 ctggccctag atcacagtcc caaaagcctg gcttgccaga taggaggcga aggcccggga
     1681 tctttggacc tgccttcccc agcatcatac tctggaatca caaggttatc tgagtgtctc
     1741 caggcacccg attcacaccc ggagttggac agtcctttcc agatggtatc tcaggatccc
     1801 cagacctcag accaaactca agaatcagac cctaccgggg aggcacatca gtccctggag
     1861 aagtctggtc atagagtctc tgtccagagc cccattgtct gggacccacc acagggtgca
     1921 gagatcagaa ttgatgtgca ggagctagga gagactggca gcagggaggc ttccgaaggg
     1981 gagtcggtac cggaggccca ggtcctgaaa caggagaacc ccgaatgcag gcccagatct
     2041 gctgagttca tcctcctgga gccactgaag gatcagaaga ccctggaacc ggaactagaa
     2101 ttgtccaagc aacagacaga gacaggaggg cacgaacaga ggcccaaggg gttggtcaat
     2161 aaactggtcc ttcagaaacc acagcagaca tcagaagggc ctcccgatgc ctggtccagg
     2221 gaggagccaa tcccagggga gaccctggcc actgctatcc cagaggagca ggccctcaga
     2281 gatgaggtag cacaactaag gagagaggtt gtaagccttg aggctaaact gcaagcccaa
     2341 gcccaaagac tggaggcccg aagtgcagag gctgtctctc tctctgagga gctggcccaa
     2401 gcacgcagaa cagaggctga ggcccatctg gaggtagagg cccgggcccg ggaacaggcc
     2461 cgtctgcgtg aagcagtaga tgcagctagc ctggagctgg aggctgcatc acgtgagcgg
     2521 gaggcactgg cagaggcgct agcagcagcg ggccgggagc ggaggcaatg ggaacgcgag
     2581 gggcccaggc tgcgggctca agttgaggct gccgagcagc aggtgcaagc tctggagagc
     2641 caggtccgct gtcatctgga ggaagctgag agggagcacc tggagaagca agcccttagg
     2701 gaggagctag agaaggctgt ggtacggggc caggaattgg gggatcggct ggagcatctg
     2761 cagcgagagc tggagcaggc ggccttagag cgccagaagt tccttcaaga acgggagagc
     2821 cagcaccaga ggtaccagca tctggagcag cgtctggaag ctgagctgca ggcagcgtct
     2881 accaataagg aggaggcatt gatgaagctc aaggccagag ccctgcagct ggaggaggag
     2941 ctaattcagc tgcgccagta ccctgtggac caggcaactg aggtacgagc tgagcctcgg
     3001 actgtggaga cccagaatgg acggctcatc gaggtggagc gaaataatgc cacactggtg
     3061 gctgagaagg cggctctgca ggggcagctg cagcacctgg aggggcagct ggggagcctg
     3121 cagggacgtg cacaggagct cctgctacag agtcagcggg cacaggagca cagcagtcgc
     3181 ctgcaggctg aaaagtctat gatggagatt cagggtcagg agctgcacag gaagctgggg
     3241 gtgctagaag aggaggtacg ggtagcaagg cgggcccagg aggagactcg tgggcagcag
     3301 caggctctgc tccgtgacca cgaggcctta gtgcagctgc agcgaaggca ggagacggag
     3361 ttggagggac tgttggtgcg gcaccgagat ctcaaggcca atatgcgagc attggaactg
     3421 gcccaccgtg agctccaggg caggcacgag cagttgcagg cccagcgggc cagtgtggaa
     3481 gcacaagagg tggccttact ggcagagcgc gagcgcctga tgcaggacgg acataggcag
     3541 cgcggactgg aggaggagtt gcggagactt cagaatgagc atgacagagc tcagatgcta
     3601 ctggctgagg tgtctcggga gcgaggggag ctccagggtg aacgtgggga gctgcggagc
     3661 cgcctggcga ggctggaact ggagcgagca caacttgaga tccagagcca gaaactgcgt
     3721 gagtccaacc agcagttgga cctgagcgcc tgtcggctga ccacacagtg tgagcttctg
     3781 acccagcttc gcagtgcgca ggaagaggag aacaggcagc tgttagctga ggtacaggcc
     3841 ctgagccggg agaacagaga actgctggag cgcagcctgg agagtcgtga ccatctgcat
     3901 cgagagcagc gagagtacct ggaccagctt aatgccttgc gccgtgagaa gcagaagctg
     3961 gtggagaaaa tcatggacca gtaccgtgtg ctggaacctg ggcccctacc ccgtaccaag
     4021 aagggcagct ggctggcaga caaggtgaag aggctgattc ggccccggcg ggagggagcc
     4081 ctccatgggg ggccacgcct gggggccgat ggggctggca gcacggaaag cttggggggc
     4141 cccctggaga cggagctccc tgagggcagg gaggcagatg ggacagggtc ctcgtcacca
     4201 gcacccatgc gccgtgccca gagctctctc tgcttgggag acgagaacct ggcaggtggg
     4261 cagcggcgta gactcagctc ccgattccct gccgggcgaa gctctgcgtc atttagtcca
     4321 ggggacaccc caaggcagcg gttcagacag cgaagaccag gccccctggg ggcgcccagt
     4381 tcccacagca aaggatctgg tgtggaatgg gatggctcca ttgagaccct ctcggaacat
     4441 gaagcagatg ccactggaga ggccctccag gaacagaaac cagagaaaca attccttacc
     4501 tcttccctca gccagtgata ctgtggggac agaaggcaca ggagtgcagc cttctcccca
     4561 ctgtagggtc agtggcattc ccaggcagcc caagagccag ggggcctggg gaccccaaga
     4621 agaatccttg gacaaagaag cctgggctct caggtccccc acagctggga ctctgaggag
     4681 gagctgggac aaggttgtgg acaggggatg tgactggtcc gaacggggag ctcctggcca
     4741 gggctcttgc tctcagatac atctatcact gagaaggcga tgtctgggag attccccagc
     4801 taaagacggc tggccctccg ccaggtctag ctggggacct aaggcccatt ccctggagac
     4861 agacctgggc taatatctga gcattgtctg ggacatgaga gtgtggagaa taaagctgta
     4921 accccttgaa tctgg
//
