LOCUS       XM_039092889            6816 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled coil domain containing 88A
            (Ccdc88a), transcript variant X1, mRNA.
ACCESSION   XM_039092889
VERSION     XM_039092889.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427796.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6816
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6816
                     /gene="Ccdc88a"
                     /note="coiled coil domain containing 88A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 157 ESTs, 1 Protein, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     134 samples with support for all annotated introns"
                     /db_xref="GeneID:305605"
                     /db_xref="RGD:1306694"
     CDS             1..6051
                     /gene="Ccdc88a"
                     /codon_start=1
                     /product="girdin isoform X1"
                     /protein_id="XP_038948817.1"
                     /db_xref="GeneID:305605"
                     /db_xref="RGD:1306694"
                     /translation="MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVD
                     GVFLNQVMLQINPKTESQRVNKKVNNDASLRIHNLSILVKQIKFYYQDTLQQLIMMSL
                     PNILVIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEEFIEKIQGLDFDTKAAVAAHI
                     QEVTHNQENVFDLQWMEVTDMSQEDTEPLLKSMASHLRRLIDERDEHSETIIELSEER
                     DGVHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLD
                     CKQELEQMEVELKRLQQENMNLLSDARSARMYRDELDALREKAVRVDKLESELCRYKE
                     RLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLH
                     DMEMERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELAEAPQKSL
                     GHEVNELTSSKLLKLEMENQSLTKTVEELRSTMDSAEGSTSKILKVEKENQRLSKKVE
                     ILENEIIQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQT
                     VSSLRQRSQISAEARVKDIEKENKILHESIKETSGKLSKIEFEKRQMKKELELYKEKG
                     ERAEELENELNRLGKENELLQKKITNLKITCEKLETLEQENSELERENRKFKKTLDSF
                     KNLTFQLESLEKENSQLDEENLELRRSVESLKCASMKMAQLQLENKELESEKEQLKKG
                     LELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQLESELQDLEMENQTLQK
                     NLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENN
                     VKIGNLEKENKTLFKEISVYKESCVRLKELEKENKELVKRATIDIKTLVTLREDLVSE
                     KLKTQQMNNDLEKLTHELEKIGLNKERLLQDEQSTDDSRYKLLESKLESTLKKSLEIK
                     EEKIAALEARLEESTNYNQQLRHELKTVKKNYEALKQRQDEERMVQSSLPISGEDDKW
                     GRESQEATRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQR
                     QTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSSLENENESIMKER
                     EDLKSLYDALIKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHKDLEDRYNQ
                     LLKQKGQLEDLEKMIKVEQEKMLLESKNHEMVAAEYKKLCGDNDRLNHTYSQLLKETE
                     ILQTDHKNLKSVLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNL
                     EEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIM
                     DQYKFYDPSPPRRRGNWITLKMRKLIKSKKDINRERQKSLTLTPTRSDSSEGFLQLPH
                     QDSQDSSSVGSNSLEDGQTLGTKKSSMVALKRLPFLRNRPKDKDKMKACYRRSMSMND
                     LVQSMVLAGGQWTGSTENLEVPDDISTGKRRKELGAMAFSTTAINFSTVNSSAAFRSK
                     QLVNNKDTTSFEDVSPQGISDDSSTGSRVHASRPASLDSGRTSTSNSNNNASLHEVKA
                     GAANIQSRPQSHSSGDFSLLHDHETWSSSGSSPVQYLKRQTRSSPMLQHKMSETVDSQ
                     AHHKMNAGSPGSEVVTLQQFLEESNKLTSIQLKSSSQENLLDEVMKSLSVSSDFLGKD
                     KPVSCTLARSVSGKAPGDFYDRRTAKPEFLRTGPQKTEDAYSISSAGKPTPSTQGKIK
                     LVKETSVLRQSKDSNPYATLPRASSVISTAEGTTRRTSIHDFLSKDSRLPVSVEPAPP
                     PAGGSSTAASSEYRTQQWSSGTLTHSGVTPESVYTQARHSRSGGPCFLNQTFTTVKMS
                     NDIFGISGNDSHGAFTVVHSSQPFLSLNTELVSNISGLPPKSLSRTTEQTFASLDKAT
                     QKDNKQFSDSRSPSHGKPQSSVGSSSLIIPECLYPDDTEVALAVSEDSQTVWYEYGCI
                     "
ORIGIN      
        1 atggagaacg aaatctttac tccccttctg gagcagttca tgaccagccc tttggtcact
       61 tgggttaaaa catttggacc actggctgca ggaaatggga ctaacctgga tgagtacgtg
      121 gctttggtgg atggggtatt cttgaaccag gtcatgctcc aaattaatcc taagacggag
      181 agtcaaagag taaataaaaa agtcaacaat gatgcttctc ttagaattca caatctatcc
      241 attttggtga aacagataaa attttattat caggacactt tgcagcagtt gattatgatg
      301 tcattaccaa atatcttagt cattggcaaa aatccctttt ctgaacaagg tacagaagaa
      361 gttaaaaagt tgcttttact cctacttggt tgtgcagttc agtgtcagaa aaaggaagaa
      421 tttattgaaa aaattcaagg tttagatttt gatacgaaag cagcagttgc cgcacatatt
      481 caagaggtca ctcataatca ggaaaatgtg tttgatctgc aatggatgga agtgacagat
      541 atgtctcagg aagacacaga accactctta aagagcatgg cctcacacct cagaagactc
      601 atcgatgagc gagatgaaca ttcagagact attatagaac tctctgaaga gcgagatggt
      661 gttcattttc taccccatgc ctcttcatct gcacagtcac cctgtggttc tccaggcatg
      721 aagcgaacag aaagtcgaca gcatctctca gtggaactgg ctgatgctaa ggccaagatc
      781 cgaagactta ggcaggaatt ggaagaaaag actgagcagt tactggactg taaacaagaa
      841 cttgaacaaa tggaagtgga attgaagagg ctgcaacagg agaacatgaa tttgctttcg
      901 gatgctcgat ctgctagaat gtaccgagac gaattggatg ccctccgaga gaaagcagtc
      961 agagttgata agcttgaaag tgaactctgt agatataaag agagactaca tgatattgaa
     1021 ttttataagg caagagttga ggaattaaaa gaagataatc aagttttatt agaaacaaaa
     1081 actatgctgg aagaccaact agaaggaact cgggctcgtt ctgacaaatt acatgaatta
     1141 gaaaaagaga atttacaatt aaaggctaaa ttgcatgata tggaaatgga gcgagatatg
     1201 gatagaaaga agattgaaga attaatggaa gaaaatatga ctctggaaat ggcacagaaa
     1261 caaagtatgg atgagtcatt gcaccttggc tgggagctgg aacagatatc cagaactagt
     1321 gaacttgctg aagcaccaca gaagtccttg ggccatgagg taaatgaatt aacatcaagt
     1381 aagttattga agttggaaat ggaaaaccag agtttgacga aaactgtaga agagctacgg
     1441 agtactatgg actctgcaga aggcagcact tccaaaatcc tcaaagttga aaaggaaaac
     1501 cagagactga gtaaaaaggt tgaaattctt gaaaatgaaa ttattcaaga aaagcaaagt
     1561 cttcagaatt gtcaaaattt aagcaaagat ctaatgaaag agaaagctca acttgaaaaa
     1621 acaattgaaa cactcagaga aaattcagag aggcagatta aaatattgga gcaggaaaat
     1681 gaacatctca atcaaacagt gtcttcctta cggcagcgtt cccagattag tgctgaggcg
     1741 agagtgaagg atattgaaaa agaaaataaa attctccatg aatctatcaa agaaacaagt
     1801 ggaaaactaa gcaagattga atttgaaaaa agacaaatga aaaaggaatt agagctttat
     1861 aaagagaaag gagagcgagc agaagaactt gaaaacgagt tgaatcgtct tggaaaggag
     1921 aatgaattgt tgcagaaaaa gataactaat ttaaagatta catgcgaaaa acttgagaca
     1981 ttagaacagg aaaattcaga gctagaaaga gaaaatagga aatttaaaaa aactttggat
     2041 agctttaaaa accttacttt tcagttggaa tctctagaaa aagagaattc ccaacttgac
     2101 gaagaaaact tagagctgcg aaggagcgtg gagtctttga agtgtgcgag catgaagatg
     2161 gcccagctcc aactggagaa caaggagctg gagagtgaga aggagcagct caagaagggc
     2221 ttggagctca tgaaagcctc tttcaagaag acagaacgct tagaagttag ctaccaggga
     2281 ctagacacag aaaatcaaag actacaaaaa gctctagaaa atagcaataa aaaaatccaa
     2341 caattagaga gtgagctaca agacttagag atggaaaatc aaacattaca aaaaaaccta
     2401 gaagaactga aaatctctag caaaagactg gaacaactag aaaaagaaaa taagtcatta
     2461 gagcaagaga catctcaact tgaaaaggac aagaaacagt tagagaagga aaacaaacga
     2521 ctccgacaac aagcagaaat aaaagacacc accttagaag aaaataatgt gaaaattggg
     2581 aatttggaaa aagaaaacaa aactttattc aaagaaatta gtgtatataa agagtcctgt
     2641 gttcgtctaa aagaactaga aaaggaaaat aaagagcttg tgaaaagagc aactattgat
     2701 attaaaacct tggttacatt acgtgaggat ttagtcagtg aaaaattgaa gacgcaacaa
     2761 atgaacaatg atctggagaa attaactcat gagcttgaga agataggttt aaataaagag
     2821 cggctcctac aggatgagca gagcactgat gacagtaggt acaaactttt ggaatcaaaa
     2881 ttagaatcca ctcttaagaa gtctcttgaa ataaaagaag aaaaaatcgc tgctttagaa
     2941 gctcggttag aagagtctac aaattacaat cagcaattgc gccatgaact taaaacagtg
     3001 aaaaaaaatt atgaagctct caaacagaga caagatgagg agaggatggt gcagagttcc
     3061 cttccaatct ctggggaaga cgacaagtgg gggcgggaaa gtcaagaagc aactcgagag
     3121 ctcctgaaag tcaaagacag gttaattgaa gtagaaagaa ataatgctac gctgcaagca
     3181 gagaagcagg cgctgaaaac tcaactgaag caacttgaga cacaaaataa taatttgcag
     3241 gctcagattc ttgcactgca gaggcagaca gtgtcattac aggagcagaa taccactctt
     3301 cagacacaga atgccaaact tcaggttgaa aattctaccc ttaattcaca aagtacttcg
     3361 cttatgaacc agaatgcaca gcttctaatc cagcagtctt ccttagaaaa tgaaaatgaa
     3421 tctataatga aagaacgaga agatttgaag tctctttatg atgctctgat aaaagatcat
     3481 gagaagctgg aacttcttca tgaacggcaa gcttcagagt atgagtctct gatctctaaa
     3541 catggcaccc taaagtctgc tcacaaaaat cttgaggtgg aacataaaga ccttgaagac
     3601 cgttacaatc agttattaaa acagaaagga caattggaag atttggaaaa aatgatcaaa
     3661 gtggaacagg aaaaaatgct gcttgaaagc aaaaaccatg aaatggtagc cgcagagtac
     3721 aagaagcttt gtggagacaa tgataggtta aatcatacat acagtcagct tttaaaagag
     3781 actgaaattt tacaaacgga ccataaaaat ttgaaaagtg ttctaaataa ttctaaattg
     3841 gaacaaacaa gattagaagc tgaattttca aagctaaagg agcagtatca gcagctggat
     3901 atcacatcta ccaagctcaa taaccagtgt gagttgctca gccaacttaa aggaaattta
     3961 gaggaagaaa atcgacatct actcgatcag atacagacac tgatgctaca aaacagaaca
     4021 ctgctggaac aaaatatgga aagcaaggat ctctttcatg ttgaacaaag acaatacatt
     4081 gataaattaa atgaattgag acgacagaaa gagaaattag aagaaaaaat tatggatcaa
     4141 tacaaatttt atgacccatc tcctcctaga aggagaggca actggattac tctaaaaatg
     4201 agaaagttga taaagtccaa gaaagatatt aaccgggaac gtcagaaatc tctaacacta
     4261 acacccaccc gctcagactc cagtgaagga tttcttcagc tgccccatca agacagtcaa
     4321 gacagctctt cagtagggtc aaactcttta gaagatggcc aaaccctggg gacaaagaag
     4381 agcagcatgg ttgcactgaa aagactgccc tttttgagga acagaccgaa ggataaagac
     4441 aaaatgaagg cctgctaccg tcgttccatg tccatgaatg acctggtgca gtccatggtc
     4501 ctagcaggag gacagtggac aggtagtact gaaaatttgg aggtccctga tgatatttcc
     4561 acgggtaaaa ggagaaaaga attgggagct atggccttct ctactacagc catcaacttt
     4621 tcaactgtca actcttctgc agccttccga tccaagcaat tggttaataa taaagatact
     4681 acatcctttg aagatgtaag tccacaaggt attagtgatg actctagtac gggatcaaga
     4741 gttcatgctt caagaccagc cagccttgat agtggcagaa catccactag caatagcaat
     4801 aataacgctt cactccatga agtcaaagca ggtgcagcta atatccaaag caggccacaa
     4861 agccacagca gtggggattt cagtctgctc catgatcatg agacttggtc tagcagtggt
     4921 agcagtccag ttcagtattt gaaaagacag accaggtcaa gccctatgct ccagcacaaa
     4981 atgtctgaaa cagtagacag tcaagcccat cacaagatga acgctggctc cccaggaagt
     5041 gaagttgtta ctctacaaca gtttttggaa gaaagcaaca agcttacctc aatacagttg
     5101 aagtcctcga gtcaagagaa tcttttagat gaagtaatga aaagtttgtc tgtctcttca
     5161 gactttctgg ggaaagacaa gccagttagc tgtaccctgg ccaggtcagt aagtggaaaa
     5221 gctccagggg acttctatga tagacggaca gctaagcctg aatttttgag aactggtcct
     5281 cagaagactg aagatgccta ctccatcagc tctgcaggga aacctacacc aagcactcaa
     5341 gggaagataa aactagtaaa agaaacctct gtgttgagac aatcaaaaga tagcaatcct
     5401 tatgccactt tacctcgtgc aagcagtgtg atctctactg ctgaaggaac aactcgaagg
     5461 acaagcatcc atgattttct gagcaaggac agtagactgc ccgtttcagt tgagccagca
     5521 ccgcctcctg ctggtggcag cagcaccgca gcctctagtg agtaccgtac acagcagtgg
     5581 tcctctggta cgctgacaca ctccggagtc acacctgagt ctgtttacac ccaggctaga
     5641 cattcacggt caggagggcc atgttttcta aaccaaactt tcaccactgt taaaatgtct
     5701 aacgatatat ttggaatatc aggtaatgac agccatgggg catttactgt ggttcattca
     5761 tctcagccat ttctatccct gaacacagaa ttggttagta acataagtgg gttacctccc
     5821 aagtcactca gtagaaccac tgaacagacc tttgcctctt tggataaagc tacacagaaa
     5881 gataacaaac agttttctga cagtcggagc cccagtcacg gtaagccaca gtcctctgta
     5941 ggtagcagca gtcttatcat ccctgagtgc ctctaccctg atgacacaga agttgcatta
     6001 gcagtttcag aggatagtca gactgtctgg tatgaatatg gttgtatttg atcaaaactg
     6061 ccaaatatgt taatattact cattgggctt atattttaag actgttacat ggagttcagc
     6121 tgtataaaag ggcatgtata taaacatgaa tgtgtaacca catcaaagtc tgcatgaagt
     6181 agtaattaca ttgtgcattt ttgcatgcct ttaaaacccc acccatattt ctctttcaca
     6241 tctttttact acttgataaa gatgataaag acactttgat gttgtggagc atgtcaaagt
     6301 agctgcatgt tctgttatca agaaaacata tccaagtcat tgtttggctg cttctaaaaa
     6361 gcgtgttcat tcgctgttcc tgctgcctgc ctcctcccgc ccctccttta tttcctgaat
     6421 gtgcacatgt acagcattaa taagggaaat gtttttgaaa tggtattttt tgtcacttaa
     6481 tcatgttatc tgttttgttc tcttttcaaa gaaatagtta atagttcaac ttaatttgaa
     6541 ctaatgctta cattcataaa actttgttca aatttaaaat attgtttgtt cataaatgtg
     6601 ttattcctag aattttctat caaatttaaa tgtgatttac acagtgagta ggagtgttgt
     6661 attataattc tcttcttggt gctgttcttt ttctgataaa tataatagtt taaatactcc
     6721 ccttcaaggt gacaatttat tggaatcctt taacacagaa atttttctag tttttttaac
     6781 atatgagtca aagagaaata aaccaattac tcatta
//
