LOCUS       NM_001006974            1825 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 86 (Ccdc86), mRNA.
ACCESSION   NM_001006974 XM_215202
VERSION     NM_001006974.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1825)
  AUTHORS   Hoshino,A. and Fujii,H.
  TITLE     Redundant promoter elements mediate IL-3-induced expression of a
            novel cytokine-inducible gene, cyclon
  JOURNAL   FEBS Lett 581 (5), 975-980 (2007)
   PUBMED   17300783
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 13, 2022 this sequence version replaced NM_001006974.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083770.1, FQ219684.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840107,
                                           SAMN12840111 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-721               JAXUCZ010000001.1  217020719-217021439 c
            722-851             JAXUCZ010000001.1  217017960-217018089 c
            852-926             JAXUCZ010000001.1  217016089-217016163 c
            927-1825            JAXUCZ010000001.1  217015059-217015957 c
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1825
                     /gene="Ccdc86"
                     /note="coiled-coil domain containing 86"
                     /db_xref="GeneID:293738"
                     /db_xref="RGD:1359280"
     exon            1..721
                     /gene="Ccdc86"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..1046
                     /gene="Ccdc86"
                     /note="cyclon; cytokine-induced protein with coiled-coil
                     domain"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 86"
                     /protein_id="NP_001006975.1"
                     /db_xref="GeneID:293738"
                     /db_xref="RGD:1359280"
                     /translation="MGTPLRRSRRLEGLNPLSLENLPDPEVSRAKRALVDFKSNPEET
                     RELESPRVPPLDLVSPQPQPETSPESPCPKQDAGFGSPQRQPEPHPGSLQLHQDLGLD
                     SPAGQTESNPESPQREQSSKLSPTQDSEVAHAKEEVIPRSPEPCPGQQAPGPEPSQPA
                     QELAFQAPSSPERQLEPSKLPPAGESVTGSLDLKKRVIASPQAPASKKLKEELPVIPK
                     GKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKQRRR
                     QEKKERRAENLRRRLENERKAEIVQVIRNPAKLKKAKKKQLRSIQKRDTLALLQKQPP
                     QRPVAKV"
     exon            722..851
                     /gene="Ccdc86"
                     /inference="alignment:Splign:2.1.0"
     exon            852..926
                     /gene="Ccdc86"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1825
                     /gene="Ccdc86"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acggagacta cacgtgagcc atgggtacgc cgctgaggcg cagccggcgg ctggaaggcc
       61 taaaccctct gtctctggag aaccttcctg accccgaagt ctctcgggcc aaacgggctc
      121 ttgtagattt caagtcgaac ccagaagaaa caagagagct cgagtctccg agagttccgc
      181 cactggacct tgtgtctccc caacctcagc cggagactag ccccgaatca ccctgtccta
      241 aacaggatgc aggctttggg tccccacaaa ggcaaccaga gcctcaccct gggtcccttc
      301 aacttcatca agatctgggc ctggattcac ctgcaggaca gacagagtcg aatccggaat
      361 ccccgcaacg agagcagtca tccaaattat ctcccacaca ggactctgag gtagcccacg
      421 ctaaggagga ggtgatccca agatctcccg agccttgccc gggtcagcaa gcaccgggtc
      481 ccgagccctc ccagccagca caggagctgg cattccaggc acctagctcc ccagagcgcc
      541 agctggagcc aagcaagcta cctccggctg gagagtcagt gaccggaagt ctcgacctaa
      601 agaagcgagt tatagcttct ccccaggccc cagcgtccaa gaaactgaag gaggagcttc
      661 ctgtaattcc gaaggggaag cccaaatccg ggcgtgtgtg gaaagaccgc tccaagaaga
      721 ggttctccca gatggttcag gacaagcccc tgcgtacctc ctggcagagg aagatgaagg
      781 agcgacagga gaggaagctg gctaaggact tcgcccggca cctggaggag gagaaacaga
      841 ggcgccggca ggagaagaaa gaacgccgag ctgagaacct cagacgccgt ctagaaaacg
      901 aacgcaaagc tgagattgtc caagtgatcc ggaaccctgc caagctcaag aaagcaaaga
      961 agaagcagtt gcgctccatt caaaagagag acaccctggc cttgctccag aaacagccac
     1021 cccagaggcc tgtagccaag gtctgagctc aggacagtcc agggcctcag caggcgaaga
     1081 gtcacagcaa gcaagcaagg cacctctcag accactgtct gacacctttc ctggggccag
     1141 cacactaaca ctgtcacatc aagatgggga ctccagccca gagggaactg aagactgtgc
     1201 tggaactcag agatttcact gtccccatct cctttccaaa gtgccttatg atcctgaact
     1261 gttgcgggtg gtagcagcag tgcacacctt taatcccagt gctcagcaga cagagacagg
     1321 cggatctcgg agttgggcca gccttgtcta tagagtacag gatagccagg gctacacaga
     1381 aatcctatct caaaaaaaac aaaaaacaaa aaaacaacaa aaggtcttga actgtgaatt
     1441 cttgtttctt ggtgagctgg taacttcctg tcttggggtc cttagtctat ccacatcggg
     1501 aggccttcta tcagaaggca gtgcctccat ttttttcagt gacaccttgg tcactagtgc
     1561 attctgctga tttggtcccc tcagtcaact gaagccagcc cttccttaat ttggcactga
     1621 aagattgaag tgggtagttg cagggagcgg agtttctctc cagcactcct ttcccacatt
     1681 ggactgaaga agccttggga cttgagccat gcccacttac tctaccgcag aggtgtttat
     1741 tggtgtcccc ataagtacag ctctaggctc ctagaaggac agaagtccct gggctttcat
     1801 tatcataata aaccattaaa acaca
//
