LOCUS       XM_006240553            4324 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 85C
            (Ccdc85c), transcript variant X1, mRNA.
ACCESSION   XM_006240553
VERSION     XM_006240553.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006240553.3.
            
            On Jan 21, 2021 this sequence version replaced XM_006240553.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4324
                     /gene="Ccdc85c"
                     /note="coiled-coil domain containing 85C; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 20 ESTs, 5 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 140 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:690965"
                     /db_xref="RGD:1589818"
     CDS             311..1612
                     /gene="Ccdc85c"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 85C
                     isoform X1"
                     /protein_id="XP_006240615.2"
                     /db_xref="GeneID:690965"
                     /db_xref="RGD:1589818"
                     /translation="MAKPPAVAAAAAAAASEELSQVPDEELLRWSKEELARRLRRAEG
                     EKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDDDRQKG
                     RKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLLDEERA
                     ALAAAGGAGGSGGGAGSRSSIDSQASLSGPLAGSAAGSGARDVGDGSSTSSAGSGGSP
                     DHHHHVPPALLPPGPHKGPEGKAGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRPLE
                     TKVKLLDGDKLPPQLPRPYGLQRSRLQQAGSGEFRTLRKGFSPYHSESQLASLPPSYQ
                     EVLQNGPACPVPELPSPPSTVYSSAGQKPEAVVHAMKVLEVHENLDRQLQDSCEEDLS
                     EKEKAIVREMCNVVWRKLGDAASTKPSIRQHLSGNQFKGPL"
ORIGIN      
        1 ggtgggcggg gcggctgggg ctcccggagc gggcccgggg gcgggcctcc gcctgctgcg
       61 cccgagcccg gagagcccgg gcaccgcggc cgccgacgca gccaccgtcc cggttcctca
      121 gccttgaggc gcgcgcgggt tccctggtga cccgagagaa gaccgcggga gggagcgcga
      181 ggcggcgcag ggcgggccgc acgcgtcccc ggccgccccc cgcgcgcgcg tggccgggcc
      241 cagagaagcc ccggcgcggg gagcgccggc ccggcgcggg cgagggcgat gccgcggtga
      301 cggccccgcc atggcgaagc ccccggcggt ggcggcggcg gctgcggcgg cggcgtcgga
      361 ggagctgagc caggtgccgg acgaggaact gctgcgctgg agcaaggagg agctggcgcg
      421 gcggctgcgg cgcgccgagg gcgagaaggt gggcctcatg ctggagcacg gcggcctgat
      481 gcgcgatgtg aaccggcggc tgcagcagca cctgctggag atccgcggcc tcaaggacgt
      541 gaaccagcgg ctgcaggacg acaatcagga gctgcgcgag ctctgctgtt tcctggacga
      601 cgaccggcag aaagggcgca agctggcgcg cgagtggcag cgcttcgggc gccacgcggc
      661 cggcgccgtg tggcacgagg tggcccgctc gcagcagaag ctgcgggagc tcgaggcgcg
      721 ccaggaggcc ctgctgcgcg agaacctaga gctgaaagag ctggtgctgc tgctggacga
      781 ggagcgcgcg gcgctggcgg cggcgggggg cgctggcggc agcggcggcg gcgcgggctc
      841 ccgcagctcc atcgacagcc aggccagcct gagcggtccc ctggcgggca gcgccgcggg
      901 ctcgggggcc cgcgacgttg gcgacggcag cagcacgtcc agtgcgggca gcggcggcag
      961 cccggaccac caccaccacg tcccaccggc cctgctgccc ccggggccgc acaagggtcc
     1021 ggagggcaag gccggtgcca cgcgccggtc cctggatgac ctgtcagcgc cgccgcacca
     1081 ccgaagcatc cctaacggcc tgcacgatcc ctcatctacc tacatcaggc cgttggagac
     1141 caaggtgaag ctgttggatg gtgacaaact ccccccacag ctgccccgcc cctacggcct
     1201 ccagagaagc cggctccagc aggcaggctc tggagagttc cggacacttc ggaaaggctt
     1261 ctccccatac cattcggaat cccagcttgc gtccctgccg ccctcctacc aggaagtcct
     1321 acagaacggt ccagcctgcc ctgtaccgga gctgccctca cccccttcca ccgtctacag
     1381 ttcagcagga cagaagcctg aggctgttgt gcatgccatg aaggttctgg aagtacatga
     1441 gaaccttgac cggcagctcc aagacagctg tgaggaggac ctgagcgaga aggagaaggc
     1501 catcgttcga gagatgtgca acgtggtctg gaggaaactg ggggacgctg ccagcaccaa
     1561 gccctccatc cggcagcacc tgtctggtaa tcagttcaag gggccgttgt agggccatct
     1621 ctccatgggt gcagactggc cctgcctgga gtctgaggcc ttagacctgg cagaaactct
     1681 ggcctagcca ccgtctttct ccgtggtgaa ttgtacatag gacacggccc accctggctg
     1741 ccctggtgtg acactgactg cccaggcctc cacctcctgc ctccctcacc agcaaacctt
     1801 ggcaagacaa gaagccatgg cctgctcgct gcagcaaagt ggccaggcag cctggctccc
     1861 cgtttgagct ccacgttcca ttagcaagaa gcttctgaga ctccaagcca agggattgtc
     1921 tggggaggtg ccctgctctt ggtagaagtc ccttgacaag tattctaact gtcccttaca
     1981 ctggacagaa gccaccagag cctcaattgt gacacgggtg gcgctttctg ctacccggcc
     2041 agagccggga ccctgggtca cggagcactg gctcccacgt atccattggc tggccgggag
     2101 ctcagggttc cctgtcacct gggggttggt gcccagccgc cctgatgcca gctgctgctc
     2161 actaacattc accccctcag tagcatctcc ttgcctaggt caggcttagc cacttcttag
     2221 gtctctcctg ccaggtttcc ttttctggtt tacagcaaca taggaaaaag ccctggagat
     2281 gtccgggctg agctcagcat tctcaatggg caggtagaac cgggccattg ccctggctca
     2341 ctgtcgatgt gacctcccca ccccccatgt gctctgggtc actatggatg gacctacagg
     2401 agccgcccct gatgagtttt ccctgggaag gaaggggcat gacctggttc tggctttaat
     2461 ctgctgtgtg gccttcagca agccactcag cttctctggg ctcccagcgg ttccctttgg
     2521 ctttgcttac tctagaaacc accccagttt ggtgggcctc tgtcctcaac aacggatgag
     2581 ctcatgtggt aacttaccag gaacatgcta ggccagcctg tctgtcatgc tgtcccctca
     2641 caggtcacat ctgagcctta gcacctccct ccaagggacc tgagcagggg acggggaggg
     2701 ggttgtcaaa tgcgtgcttc agtgtacgtg ttcatgcctc agacagcggg tgacgcatga
     2761 ctgatggggg tgttctctaa cgtggtgtga ggagaacgag gactggggtg ctcttgtgaa
     2821 ctgtgcagat gctatctgtg ggaggccctg gcctcgctgc cggcatcatg tatggcatca
     2881 cgtaccgtgt tttacaaaca cactcagcag ctgtccccat gcaatggtac ttagagcccc
     2941 acacagccca aagagcttgt ccttgcctcc catacctgtg agcagagggg acaggccaag
     3001 aaggtgggtg gcgtctctgc tccccaacct tgggttgttc ccagcgcctc tgctgcccac
     3061 ccccttgggt cccatactct caggggaaag gcccacggcc cttggtgtgc ccagggagtg
     3121 ctatgcaggg gccggaggga accagcctac tgctctggcc gctggcgtca ctgggaaact
     3181 ctagaaggag ctgctgtatg gtcaagtgat aaaacttgga actccaactg ctggccccag
     3241 tactgggtaa tctctaagtg ggctgctggg caggcaagac ccttcctggt tcttttgaga
     3301 acccagaatg ttgaggtatg tgggcccaca caaggtggga gccaagtcag agagtcccag
     3361 tcaaatctgt atcaggacag tttagccacc tctgaaataa gcaataagta agagttcctg
     3421 gagtctgaag accagtcaag aaagagccta gaaacaacct ttcccttttg gagaggtgtg
     3481 accctgtccc taatgctgca gaggcatcct gggaacctaa agagaatttc ttgtagaccc
     3541 tctgcccttg tgcagggtgg aacaagatat accccagccc tttgcagtgg gctgccctct
     3601 aggacagtct gcatcatatc tcgagcctat caggagaggc cagcagcacc cagcggagcc
     3661 ctgggctggg gaccacaggt gaccttcgtg acccctccct tccggagcct tagctttgca
     3721 gtgccgactc tccatctcac aggatgcttg gactggctcc accccccact gtgacaggtc
     3781 acctggcccc atctaggtgg cctggccttc cctggagtca gaatctgctg agcacatctt
     3841 catctgcatt caacagccac tcgccagtgt ttaaagacaa agtgaccttt catttttctt
     3901 tcttgaaact tgagaggaag tgagatacac actactgatt tttttttttt tttaaagaaa
     3961 caaactagac gcatggctgc agagtggcag aggtgtctat tttcatactg tgggggaaag
     4021 tgctgctttt gggaggggct ggaacgcctg gtttctgccc cgggccagtc ttgtacagga
     4081 gttggtggtg agccctgcag ctgccctctc ctgccctggc tgtgtagagc tggagcctgt
     4141 gcccttcggc ggtttctacc ttctatcgag ccacttcgat ttgtggagag agagaaaaaa
     4201 atagaacttt tgatagtgtg gtaaaagcat tgatttgaac tattttagta aaaggagtaa
     4261 catataagac tgtgacagtg tctactttga actagataat aaaggcctct ttgtgagcct
     4321 cgga
//
