LOCUS       NM_001007660            3051 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 82 (Ccdc82), mRNA.
ACCESSION   NM_001007660 XM_217082
VERSION     NM_001007660.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 3051)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081989.1.
            
            On Nov 29, 2004 this sequence version replaced XM_217082.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081989.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132269, SAMD00132275
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q11"
     gene            1..3051
                     /gene="Ccdc82"
                     /note="coiled-coil domain containing 82"
                     /db_xref="GeneID:300359"
                     /db_xref="RGD:1359666"
     exon            1..13
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            14..169
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            170..250
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            251..978
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..1815
                     /gene="Ccdc82"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 82"
                     /protein_id="NP_001007661.1"
                     /db_xref="GeneID:300359"
                     /db_xref="RGD:1359666"
                     /translation="MVHARRHETRKNSKTQVPEQKSRVDWRRTKRSVSQLFDSDEELD
                     SDEEIGSDEDLDGGESIDSDGKLDISKDSGINEIPEKETELNLIKVESERSNSKCHMN
                     TSSSSADEEEMNKTKHNDLPDDEAHPGQAEGHHNKLTGQVLEEDVEDECIKPGKRKRL
                     SSVMYDSDESDDSDILVRKASAKHPRRVVEDECSSLEMERETPEKSPAARKREYHQKL
                     QELCERSRQKQRHNSGRNCESSEKDSCSSTDEDEDDDDYGDAENEDDYMIDDFVVGDE
                     EADEENKNQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDGSFLETLYA
                     GKRKKSYAQDMLTSLHYLDDRFIQPRLESLVSRSRWREQYKERVESYSDLSIHWKSPE
                     NCGCQACGLHRYCKFSVRLSGKLYNTRTMETDDFMSRDKQVFIVGRICAERTKIYHKL
                     KHFKFKLYQDCCSIAYTKEVGDEQVKDTVKRLFCQLKKSGWIRKKHGQLEEYLNSADY
                     FQDEKFKL"
     exon            979..1171
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            1172..1264
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1389
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1560
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            1561..1746
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
     exon            1747..3024
                     /gene="Ccdc82"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgctttga aagaccctta tcagtgggta cacagccctt ctacagctca tgcgcggtct
       61 tggtgaagct gtatcaaagg ttcctgcttc tatcaacacc agtccctcca ttttggaggc
      121 ctcagcaccc acttcctgta tctggggagt gagtcccaga gagagccagt tactgcgtag
      181 ccttggacgg ggaatcagga gacctggttt ctaatccctg ctctgtcact agcaagcttt
      241 gtgatcttcg aagcttaagt gaaaatggta catgctagaa ggcacgaaac aagaaaaaat
      301 tctaaaaccc aagtaccaga gcaaaaatct cgagtcgatt ggcgtcggac taagagaagt
      361 gtctcacagt tatttgatag tgacgaagag cttgatagtg acgaggaaat tggcagtgat
      421 gaagaccttg atggtgggga aagtattgac agtgatggaa agcttgatat tagcaaggac
      481 tctggtatta atgaaatacc agaaaaggaa acagagctta acttaatcaa agttgaaagt
      541 gagagaagca acagtaaatg tcatatgaat accagcagta gttcagcaga tgaagaagaa
      601 atgaacaaaa ccaaacataa tgacttacca gatgatgaag ctcacccagg tcaagcagag
      661 ggtcatcaca acaaactcac tggacaagtc ctagaggagg atgtggaaga tgaatgcatc
      721 aagccaggaa aaagaaaaag gctgtcctct gtgatgtatg acagtgatga aagcgatgac
      781 agtgatatcc tagttagaaa agcaagtgct aagcacccac gcagggtggt cgaggatgaa
      841 tgttcttcat tggaaatgga gcgagaaact cctgagaaat caccagctgc tcgaaagaga
      901 gaataccacc aaaagctaca ggaactctgc gaaagatcac gccagaaaca gagacacaat
      961 agtggtagaa attgtgagag ctctgaaaag gactcttgtt caagcactga tgaggatgag
     1021 gacgatgatg attacggaga tgctgaaaat gaagatgatt acatgattga tgattttgta
     1081 gtaggagatg aggaagctga tgaagagaat aaaaatcaag gagaaaatct gactacatca
     1141 caactgaaat tagtaaaaca aaattctctt tattctttta gtgaccatta cactcacttt
     1201 gaaagagttg tgaaggctct tctgatcaat gcttttgatg gatcttttct ggaaactttg
     1261 tatgctggca agaggaagaa atcctatgca caagatatgt tgacatctct tcattacttg
     1321 gatgatcgct ttattcaacc ccgtctggag agtttagtct ctagaagtcg gtggagagag
     1381 caatataagg agcgggttga aagctactct gacttaagca tccactggaa gagccccgag
     1441 aactgtggct gccaggcttg tgggctgcat cgctactgta aattctcagt gcgtctctca
     1501 ggaaagttat ataacacccg gacgatggag acagatgact tcatgtcacg tgacaagcag
     1561 gtgtttattg ttggcagaat ttgtgctgaa cggaccaaaa tttatcataa actaaagcat
     1621 tttaaattca aactatacca agactgttgc tccattgcat acacaaaaga agttggagat
     1681 gaacaggtca aagatacagt aaagagactc ttctgtcagt taaaaaaaag tggctggatt
     1741 agaaagaaac atggtcaact ggaggagtat ctaaattctg cggattattt tcaagatgag
     1801 aagtttaaat tatagcatgc ttccttcaga ggagatttta taaatttctg taaatgtgaa
     1861 gatcatgagt tttttttctc tgtgtcatgt atcattggtt gtatcttcat agcaaaatat
     1921 ctcgtgtatg tgcccactca atctttatga aatgccacag caaagcctaa taacagtcat
     1981 agattttcat ggagaacatc agctttgtgg ttcagaagtc cctcagtctg ttttggtcat
     2041 gtggttattc ttttcccaca catgaccagc agatgaatgt gctgtcatgt tctgtcagtt
     2101 tagtagaaat aggctgtgtt acaatatatt tggactgtcc taaagatggc ttgctttatt
     2161 aagtgtatta ttattaagtg tagtaattgc cttatgaaca caaggacctg agttcagttc
     2221 cccaaaccat atttaaaata aaagccagac atgatggcat gtacttgtaa tccccacact
     2281 gggaggcgaa gatgaggcag atccttgagg cttgttggtc aggtatccag cctatgggtg
     2341 tctcatcagt gagagacact gtctgagaaa acaagaatgg gtgatgcttg tgaatgacca
     2401 aggctatcca tcctctgagc tcaagatgca tgcaaacaca aatgttcatg tgcccacaca
     2461 tttgagcaac cacacatgca ccttcacatc cacagtatat atgcatgtgt atatttatac
     2521 ctctatgtat gtattcttgt accccttggc agtattaaat aatcttcagt aataaatatc
     2581 tgtaatattt cctcaattgt gaattatgaa gaagcttcag accaccatgc attcagtgtc
     2641 ctagcctcag aatgagacca tggcgatcca ctccaggtgg agaggtattt ccttctgcta
     2701 aagtttccct aataatagat ggctcgtccc cagggtcttt caattctcac gttcaggaag
     2761 aacttcttga tatatatttt aattctctat aatgttcttt cttgtttctt tacagtttta
     2821 tctgcaatac attaaaaatt aaggtgtatt agatttttaa tcataacttt ctctatgtat
     2881 gtctgtatgt atatgttcta gtctgacaat ctcaagagac aagttcaacc aaaaatactt
     2941 ggaaggctta tttttgtgcc tctcttactt tgcacatcct aattttttcc taatgcaata
     3001 aagtaaaatg gttttaaaga ctaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
