LOCUS       XM_039087110            1497 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 78
            (Ccdc78), transcript variant X1, mRNA.
ACCESSION   XM_039087110
VERSION     XM_039087110.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087110.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1497
                     /gene="Ccdc78"
                     /note="coiled-coil domain containing 78; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 17 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:302996"
                     /db_xref="RGD:1560244"
     CDS             111..1388
                     /gene="Ccdc78"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 78 isoform
                     X1"
                     /protein_id="XP_038943038.1"
                     /db_xref="GeneID:302996"
                     /db_xref="RGD:1560244"
                     /translation="MEYRAAPDPRPWASLQVAENVVPGAEDWLPRVSGNPARATSLET
                     EPQTHLELSEEQRLQISKELVDLQIATHHLREQHEAEVFELRREVLRLESRVLELEMH
                     GTGACQGQTVQPAANPGQYQVSPQEPSGGQQRLQEELKWVLEHHRVRQQALETQVGAL
                     SRQLQGAREEARTAGQQLAAQAMDQLRQAEAENAQLQLQLKKLNEEYAVRLQRYAKET
                     AETSSSTNQASLQAFLEAALQDIRAAHRSREQQLAQAARAYRKRLADLNQRQELLLTT
                     CRATFATAINLEPSPLHWAAELSHPRENEYGPHRTTLLLYPEKGSGEASKEDKSQPLA
                     LDTASWVQIQQKLQDFSQDTQAELERERAQLMVRATMAEQQLSELQEYVDQHLGRYKQ
                     EILKLRKLANSGDSQGVESMPSTRPRRPRTQSH"
ORIGIN      
        1 gatcaacaga ggccttggca acactgacaa cactcccagt aacagcaagg aagcaggcca
       61 ccatcagacg gattagaggc cagggcttct tggaggatag tattgcctct atggagtata
      121 gggcagcccc agaccccagg ccatgggcct cacttcaagt tgcagagaat gttgtcccag
      181 gagctgagga ctggctgcca agagtttctg ggaacccagc ccgggccact agcctggaga
      241 cagagcccca aacacatctg gagctgagtg aagaacagcg gttgcagatt tctaaggagc
      301 tagttgacct gcagatcgca acccatcacc tgcgtgaaca gcatgaggct gaagtctttg
      361 agctgaggag agaagttctt cgactggaaa gtcgggtgct agagctggaa atgcacggaa
      421 ctggtgcctg ccagggacag acagtccagc cagcagccaa tccagggcaa taccaggtgt
      481 caccacaaga gccatcggga ggccagcaga ggctgcagga ggagctgaag tgggttctgg
      541 agcatcacag agtcaggcag caggcactgg agacacaagt gggagcccta agtcggcagt
      601 tgcagggagc ccgagaggaa gccaggacag ctggtcagca actggctgcc caagccatgg
      661 accagctccg gcaggctgag gctgaaaatg ctcagctgca gcttcagctg aagaagctga
      721 acgaggagta cgccgtccgg ctgcagcgct atgccaaaga gacagcagag acttccagta
      781 gcacaaatca ggcatctctc caagctttcc tggaggctgc tctgcaggac attcgggccg
      841 cacacagaag ccgagagcag cagctggccc aagcagcccg ggcctaccgc aagcgcctgg
      901 cagatctgaa ccagaggcag gagttgctgc taaccacctg cagggctact tttgccacag
      961 ccatcaacct ggagccatca cccttgcact gggccgctga actcagccac ccaagggaaa
     1021 atgagtatgg cccacacagg acgacactgc tactgtaccc agagaaggga tctggtgaag
     1081 cttccaagga ggacaagtca cagccactgg ccctagacac tgcatcctgg gtccaaatcc
     1141 agcagaagct gcaggacttc tcccaggaca cccaggcaga gctagaacgg gaacgggcac
     1201 agctgatggt ccgggccacc atggcagaac agcagctttc tgagttacag gagtatgtgg
     1261 accagcactt gggcaggtac aagcaggaaa tcctgaaact gaggaagttg gcgaattcag
     1321 gagattccca aggagtagaa tctatgcctt ccactaggcc ccggcgtcca aggactcaga
     1381 gtcactaggt agtctcccag aaaaagctca aatcaaatct cttcacagcc agcatggaac
     1441 cctctggacg cccaccccca gaagtgattc ccagaatata caaaagtcag aactgaa
//
