LOCUS       XM_039095197            3025 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 66
            (Ccdc66), transcript variant X1, mRNA.
ACCESSION   XM_039095197
VERSION     XM_039095197.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086034) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Aug 5, 2024 this sequence was replaced by
            NM_001432921.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3025
                     /gene="Ccdc66"
                     /note="coiled-coil domain containing 66; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 142 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:306238"
                     /db_xref="RGD:1560873"
     CDS             72..2909
                     /gene="Ccdc66"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 66 isoform
                     X1"
                     /protein_id="XP_038951125.1"
                     /db_xref="GeneID:306238"
                     /db_xref="RGD:1560873"
                     /translation="MNLGDGLKLETELLDGKTKLILSPYEHKSKVSVKMGNKIKIAKY
                     SLRTKQTGHTLKSTQNTYIGSENLSQKKISTSDTSQAKRENSRLTFSSPSTDLCKQYS
                     EKDCLRVQKEISPTASSIRKTVNTSTDTDPAAKQKPCRKPTAAEGMGSGLVCLTQDQL
                     RQILMLSVNQGNGSMSLPENGEEVTSQDSLHLISIPSQPKEVSVTGLLQKTEAVSPVA
                     RENEPVPQRAQAASQQCEQKATVESEWKPADIFSTLGERERDRSLLEARRAQWKKELD
                     EQVALKKKEKEASQKWPDPWKPSEILCEKLQVLERSKEAGLLESPCITVKQEQQRKWI
                     EELNKQVEDDQQRKAEEKLIYSKGEEHDRWAVHFDSFKSHPGSQSRLSSQLTPQHLES
                     LCVSPDTQELADVSSVDTPPPAVQVKPSEKEQRARPVMDMSVSHGQKTNFLRSMTALL
                     DPAQIEERERRRQKQLEHQKAITAQVEENRRKKRLEEEQRRKEEQEEELRLAREREEM
                     QRQYEEDILKQKHKEEIMTLKTNELFHTMQRAQELAQRLKQEQRIRELTQKGHDTSRL
                     IQNLGAHVDCKASTPVSSSRDTEEAANDTRAAATSTASPKKDTGVQTDDVNLGIFNDG
                     LPHCGSVTEWGVRNLSSPEISAEFSGQTGIRKEKQELSMDKGTHLDKENSWYNNRCTQ
                     HRRTEKQTKLVKKCPKKPAWNINKPLKRYVPASAKYPAHLQKEKEERKVRRQMELLHL
                     VQRNDPETLSQNNGASPDIFVSSHREAESEMRLHLLKKVEEPLETSVSKERFQTSPAV
                     KSRTQQTQSNILHLPPKNSDYEKETLTLGDGHTKLSDERSEPSHFIPYVRTNEIYYLD
                     PDAPLSRPSTQDNQYQKSHDCGGGQELFDSDHIRDPLLNPKLVKSRDRQQAILRGLSE
                     LRQGLLQKQKELETNLIPLTANQEDNFSSSF"
     polyA_site      3025
                     /gene="Ccdc66"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gtttgttgag cagggacggc aagctgggtc acacaagtgg cctgagcgag ctgcgggtgg
       61 gcggcggtgc catgaacctg ggagatggtt taaagcttga aacggaatta ttggatggaa
      121 agaccaagct aatactgtct ccgtatgagc ataaatcaaa agtttctgtg aagatgggaa
      181 ataagatcaa gattgcaaaa tattctttaa gaacaaaaca gactggacat actttaaagt
      241 caacacaaaa tacttacatt gggagtgaaa atctttctca aaagaagatc tctacttcag
      301 acacttcaca agcaaaacgt gaaaacagta gactgacatt ttcttcaccc agtacggatt
      361 tatgtaagca gtattcagaa aaagactgtc tccgtgttca aaaggagatt tcacctacag
      421 cctccagtat acggaagact gtaaacacca gcacagatac cgacccagca gctaagcaga
      481 agccgtgcag aaagcccacc gcagcggaag gcatgggcag cggcttggtg tgtctcacac
      541 aagaccagct gcggcagatc ttgatgctca gtgtgaacca gggaaatgga tccatgtccc
      601 tccctgagaa cggggaggag gtaacaagtc aagatagttt acatttaatc agtattccta
      661 gtcagccaaa ggaagtgagt gtcacaggat tactgcagaa aacggaggcc gtttcccccg
      721 tcgcacgtga aaatgagcct gtcccccaga gagctcaagc ggcatctcag cagtgcgagc
      781 agaaagccac cgtagagagc gaatggaaac cagccgacat attcagtact ctgggggaaa
      841 gggaacgtga tagaagtttg ttggaagcaa gaagagccca gtggaaaaaa gagctagacg
      901 aacaggttgc tttaaagaag aaagaaaaag aagcttctca aaaatggcct gatccttgga
      961 aaccgtctga aatactgtgt gagaagcttc aggtccttga gcgatctaag gaagcagggc
     1021 tgttggagtc cccttgcatc actgttaaac aggagcagca gagaaaatgg attgaagagt
     1081 tgaataagca agtagaagat gaccagcaaa gaaaagcaga agaaaaactg atatattcaa
     1141 agggtgagga gcatgacaga tgggcagtgc attttgattc attcaagagt catcctggtt
     1201 ctcagtctcg actgtcctct cagctaacac cccaacacct ggagtcactc tgcgtgtctc
     1261 ccgatactca ggagctggct gatgtcagca gtgttgacac acctccacct gcagtccagg
     1321 tgaagccttc agagaaagaa caaagagcca ggcctgtcat ggatatgtct gtgtcacacg
     1381 gtcagaaaac aaactttctc cgttcgatga ctgcactctt agatccagca cagattgagg
     1441 agcgggaaag acgccgacaa aaacaactag aacaccagaa agcaatcacg gctcaggtag
     1501 aagagaaccg caggaagaag cggctggagg aagaacagag aaggaaggag gagcaggagg
     1561 aggagctgcg cttggcaagg gagcgggagg agatgcagag gcagtacgaa gaggacattc
     1621 tgaagcagaa acacaaagaa gaaatcatga ctctaaagac aaatgagctc ttccacacaa
     1681 tgcagcgagc gcaggagttg gcacagaggc tcaaacagga gcagaggatc cgagaactga
     1741 ctcagaaggg gcatgataca tccaggctga ttcaaaatct cggtgcacac gtggactgta
     1801 aggcatccac tcccgtctcc agttcacgag acaccgagga ggctgctaat gacacacgtg
     1861 cagctgccac ttcaacagcc tctcccaaga aggacactgg cgtgcagaca gatgacgtaa
     1921 acttaggaat tttcaatgat gggctaccac actgtgggtc agtaacagag tggggagtca
     1981 gaaacctttc ttctccagag atttctgcag aattcagtgg acagactggc attaggaaag
     2041 agaaacagga actaagtatg gataaaggca ctcatttaga caaagagaac agctggtata
     2101 acaaccggtg cactcagcat aggagaacag agaaacaaac aaaactcgtg aagaaatgtc
     2161 ctaagaagcc tgcctggaat ataaataagc ctctcaaaag gtatgttcct gcatcagcga
     2221 agtaccctgc acatctccag aaggagaaag aggaaagaaa agtaagaagg cagatggagc
     2281 tgcttcactt agtgcagaga aacgatcctg agactctctc ccaaaacaac ggcgcttcac
     2341 cagacatttt tgtttcatct caccgagaag ctgagtcaga aatgaggttg catcttctca
     2401 aaaaggtaga agaacctctg gaaacctcgg ttagtaaaga aaggtttcag acatcgccag
     2461 cagtaaaaag cagaactcaa caaactcaga gtaatatatt acacttacca ccaaaaaaca
     2521 gtgactatga aaaagagact ctgaccttag gagatggtca tactaaattg tcagatgaga
     2581 ggtctgagcc atcccatttt attccctatg ttcgaacaaa tgagatctat taccttgatc
     2641 cagacgcacc cttgtctagg ccttcaactc aggacaacca ataccaaaaa tctcatgatt
     2701 gtggtggagg acaagaacta tttgactccg accatatcag ggatccactc cttaatccta
     2761 aactggtgaa aagcagggac cgccagcagg ccatccttag agggctttca gagctaagac
     2821 agggtcttct ccagaaacaa aaggagttgg aaacgaatct cataccctta actgcaaacc
     2881 aagaagataa ttttagttct tcgttttaaa tatgctcacc atgcaactgc atttctcaag
     2941 cacccaatga aaaacttcac attatgtagt gaaatgatgt attttctaaa tacaataaaa
     3001 aagtttatag tttaaaaaaa aaaaa
//
