LOCUS       NM_001134766            2896 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 62 (Ccdc62), mRNA.
ACCESSION   NM_001134766 XM_001079152 XM_213777
VERSION     NM_001134766.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2896)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2896)
  AUTHORS   Chen,M., Ni,J., Chang,H.C., Lin,C.Y., Muyan,M. and Yeh,S.
  TITLE     CCDC62/ERAP75 functions as a coactivator to enhance estrogen
            receptor beta-mediated transactivation and target gene expression
            in prostate cancer cells
  JOURNAL   Carcinogenesis 30 (5), 841-850 (2009)
   PUBMED   19126643
REFERENCE   3  (bases 1 to 2896)
  AUTHORS   Chen,M., Ni,J., Zhang,Y., Muyan,M. and Yeh,S.
  TITLE     ERAP75 functions as a coactivator to enhance estrogen receptor
            alpha transactivation in prostate stromal cells
  JOURNAL   Prostate 68 (12), 1273-1282 (2008)
   PUBMED   18563714
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On or before Sep 6, 2008 this sequence version replaced
            XM_213777.4, XM_001079152.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.164059.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-162               JAXUCZ010000012.1  38320605-38320766   c
            163-355             JAXUCZ010000012.1  38317083-38317275   c
            356-522             JAXUCZ010000012.1  38314082-38314248   c
            523-624             JAXUCZ010000012.1  38311626-38311727   c
            625-796             JAXUCZ010000012.1  38310089-38310260   c
            797-898             JAXUCZ010000012.1  38307834-38307935   c
            899-987             JAXUCZ010000012.1  38303253-38303341   c
            988-1103            JAXUCZ010000012.1  38302588-38302703   c
            1104-1826           JAXUCZ010000012.1  38299393-38300115   c
            1827-1935           JAXUCZ010000012.1  38296712-38296820   c
            1936-2052           JAXUCZ010000012.1  38293318-38293434   c
            2053-2145           JAXUCZ010000012.1  38285796-38285888   c
            2146-2896           JAXUCZ010000012.1  38284089-38284839   c
FEATURES             Location/Qualifiers
     source          1..2896
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q15"
     gene            1..2896
                     /gene="Ccdc62"
                     /note="coiled-coil domain containing 62"
                     /db_xref="GeneID:689909"
                     /db_xref="RGD:1586391"
     CDS             1..2106
                     /gene="Ccdc62"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 62"
                     /protein_id="NP_001128238.1"
                     /db_xref="GeneID:689909"
                     /db_xref="RGD:1586391"
                     /translation="MRDFEGTASWAVALPPPLRPSTYGVSEVTRSWHQLSVRERASSM
                     NPSTTLYRRQNIGSEVESSTIEKQRKELQLLIGELKDRDKELNDMVAVHQRQLLSWEE
                     DRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLESNQMECQTALQKTQQQLQEMA
                     QKATHSALLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDKDIIEAVNH
                     ISDCSGKFKLLEHALRDAKMAETCVVKEKQDYKQKLKALRIEVNKLREDLNEKTTENN
                     EQREEIIRLKQEKSCLHDELIFTVEREKRKDELLDIAKSKQDRTNSELQNLRQIYVKQ
                     QSDLQFLNFNVENSQELIQIHGLKMEEPKALECSRDMCLSDLDNNYPKIDIKRERNQK
                     SLVKDQKFEVTLAQHNRSDKSSCDACREKKLQVNTAFGEKSVIGLSSLFTKDLLEKQK
                     SWSLGGKIQTEPENKVTLCKIHSKSPKCNGVELQIEEKQLSDASNSLPDEKQWQDINV
                     YLGLSNCPVSKQPDKLDGDCHDPTETSEISYCTQNDVCIGDLSEFKCCHPSNIIIEAP
                     GHMSDIEWMNIFKPSKVQRIVRHKTLCTCSRSVDALKHNSSASELIGIQPPQCLGSSK
                     SAEREDESETPPDKRTESNEKDDFSPTSKLQRLLAESRQMVTDLELSTLLPISCDNFN
                     RSKLEVSEEPNENTTLVSH"
     exon            1..162
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            163..355
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            356..522
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            523..624
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            625..796
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            797..898
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            899..987
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1103
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1826
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            1827..1935
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2052
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            2053..2145
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
     exon            2146..2896
                     /gene="Ccdc62"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgcgtgact ttgaaggcac agcgtcgtgg gctgtggcct tacccccgcc actgcggcca
       61 agcacctatg gcgtttctga ggtgacccgc tcctggcacc aactctctgt gagggaaagg
      121 gcatcatcca tgaacccttc gacgacctta taccggcgcc agaacatcgg atcagaagtt
      181 gagagttcca ctatcgagaa gcagcggaag gagcttcagc tgctcattgg agaattgaaa
      241 gatcgagata aagagctcaa tgacatggtt gcagtgcatc agagacaact tctctcatgg
      301 gaagaggatc ggcagaaagt gttgactttg gaggagcgct gcagcaagtt agaaggtgag
      361 ctgcataaaa gaactgacat aatcaagtca ctcatgaaga aggtcaaaac gcttgagtcc
      421 aatcagatgg agtgtcagac ggcgcttcag aagactcagc aacagcttca ggaaatggct
      481 caaaaggcca cccattctgc cctcctctca gaagaccttg aggctagaaa tgaaaatctc
      541 agcagcacgt tagtggacct ttctgctcag gtaggacagt tgcaagctag agagcaggct
      601 ctcactacca tgataaagct gaaggacaaa gatattattg aagcggtcaa tcacatttca
      661 gactgttctg gtaaatttaa gctgttagag cacgctttgc gtgacgctaa gatggcagag
      721 acttgtgttg tgaaggaaaa gcaagattat aagcagaagt tgaaggctct gaggattgag
      781 gtcaataaac tgagagagga tctaaatgag aagacaaccg aaaacaatga acagcgagaa
      841 gagatcattc ggctcaagca agagaaaagt tgtctgcatg atgaattaat ttttactgtc
      901 gagagagaga agaggaaaga tgagttactt gatattgcaa agtcaaagca agatcgtaca
      961 aattcagagc tacagaatct gagacagatt tatgtaaaac agcagagtga cctgcagttt
     1021 cttaatttca atgtagagaa ttctcaggaa ttaatacaga tacatggctt aaagatggag
     1081 gaaccaaagg ccctggagtg cagcagagac atgtgtttat cagaccttga caataactac
     1141 ccaaaaatcg atattaaaag agagagaaat cagaagtcat tggttaagga tcaaaagttt
     1201 gaggtcacgt tggctcagca caataggtca gacaagagct cttgtgatgc atgcagagag
     1261 aagaagctac aggttaatac tgcgttcggg gaaaaaagtg taattggtct ctcatctcta
     1321 tttaccaaag acttactgga gaaacaaaag tcttggtctc tgggtggaaa aatccagact
     1381 gaaccggaaa acaaagttac actatgcaag attcactcaa aatcaccaaa gtgcaatgga
     1441 gtggagcttc agatagaaga gaagcagctg tcggacgcgt ccaactcact gcctgatgag
     1501 aagcagtggc aggacatcaa cgtctacctg ggcctctcca actgccctgt ctcaaagcag
     1561 cccgacaagc tggatgggga ctgccacgac cccacagaaa catcggaaat ctcatactgc
     1621 acccagaatg acgtctgcat tggggacctg tctgagttca agtgctgcca cccaagtaac
     1681 atcatcatcg aagccccagg acatatgtcc gatatcgagt ggatgaatat tttcaagcct
     1741 tccaaagtgc aaaggattgt tcgccacaaa accttgtgca cttgttcaag aagtgtcgac
     1801 gcactgaaac acaattcctc agccagcgag ctcattggca tccagcctcc ccagtgtttg
     1861 ggttcctcaa agtctgctga aagagaagat gagtcagaga cccctcctga caagagaacc
     1921 gaatccaatg aaaaggatga cttttctcct acaagtaaac tacagcgcct gctggccgag
     1981 tcccggcaga tggtcacgga cctggagctg agcacactgc tgcccatcag ctgtgacaat
     2041 ttcaacagaa gtaaattaga agtctcagaa gagccaaatg aaaacaccac ccttgtgagt
     2101 cattgaaaga gacaaagtca acttggacat tcactgtggc catgtcagga ttctctttgg
     2161 aaggcagaaa gtggatacca tccatcgtca cctgaagata aagaggactg tgatcccaca
     2221 tagataggca gcctttaatg caaaggcaag gagacactca aagtttattt cttaaagcat
     2281 ctgcattttt tttgatgaac tttttttttg ttgttgttta aaaaataatt ttcatgccta
     2341 aaagattagg tcttactcta cacacgtgtt tggaaatatg ctaaaaggaa aagacaaaaa
     2401 acaaactgtc acgatgcaga aaccttttaa caacatcctg ggagtatctg acaccatgtg
     2461 taagacgccg tgttcgttct ctgcctgtgc gcatgtccac atcatagccg tatttcccaa
     2521 gagtccgctt cctgtgtgtg acgcagtctt tcttctcttc tggtctcagt gttggacttt
     2581 gttgtagtga tggacatgag ataagatggt gtaaagtttg taacgggaca ctattacctt
     2641 gggtgctagc agttacggcc cgcctgtcct caggcgacag ctgtatcttg tctggctctg
     2701 tagtagacag ttcacttaca caggacagca cttgctgcaa gatcaagttt tatatggatt
     2761 ttaaagaaaa tattgaagac taagaattct attttacttg taatttaatt ttttaaaaga
     2821 agattatact atttgcctct gtcctttcta ccagaattga ctagtttcat tcaataaaaa
     2881 tatttttaat aataaa
//
