LOCUS       NM_001034945            2224 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 60 (Ccdc60), mRNA.
ACCESSION   NM_001034945 XM_573406
VERSION     NM_001034945.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2224)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2224)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001034945.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC103639.1, SRR26360194.1608097.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-502               JAXUCZ010000012.1  45975448-45975949
            503-582             JAXUCZ010000012.1  46045400-46045479
            583-753             JAXUCZ010000012.1  46080650-46080820
            754-861             JAXUCZ010000012.1  46090754-46090861
            862-969             JAXUCZ010000012.1  46099145-46099252
            970-1060            JAXUCZ010000012.1  46111335-46111425
            1061-1277           JAXUCZ010000012.1  46115367-46115583
            1278-1362           JAXUCZ010000012.1  46121863-46121947
            1363-1434           JAXUCZ010000012.1  46126196-46126267
            1435-1497           JAXUCZ010000012.1  46130284-46130346
            1498-1620           JAXUCZ010000012.1  46130926-46131048
            1621-1752           JAXUCZ010000012.1  46132774-46132905
            1753-1942           JAXUCZ010000012.1  46135531-46135720
            1943-2224           JAXUCZ010000012.1  46140685-46140966
FEATURES             Location/Qualifiers
     source          1..2224
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..2224
                     /gene="Ccdc60"
                     /note="coiled-coil domain containing 60"
                     /db_xref="GeneID:498190"
                     /db_xref="RGD:1564283"
     exon            1..502
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     CDS             416..2044
                     /gene="Ccdc60"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 60"
                     /protein_id="NP_001030117.1"
                     /db_xref="GeneID:498190"
                     /db_xref="RGD:1564283"
                     /translation="MTKAPATKKLQRVPSKAIWLFSGSDQLTQASDKTVKSTKSMDKE
                     IVNLKKDLIRSRFLIQCVKIGRGYFTMLQEETAFKKHQQHLKKLQEEELNKFQPAKKY
                     SDIQCRDTLLTTYEYEKMKKLEAGIIIRPFTPIHNCIMAPSLPESHVDPLFRQLCALH
                     WLLEALTIDHTHHTMRPVIACWNPKDPGGSKSTIKKINKDKSMGQRWDHFVTAPKTKK
                     FKAPAIRSLATRKPSRRGSALSLTRTSGGSSPQSSMMSVNPSSDEPTGSKDIEDNESS
                     STKPEEEVLHFSLQKLLEMVREDARRTILMETEMQKKAPSILSLVKQVKSDYGWKDWQ
                     TTHKSSERSSTTSGESHIQVTQKKSKGRANRDIIYCKTGICNTMRAKFYSVAQEAGFC
                     LQDKMEILKKRQEERGLQKFHSFIVTSNFQKDIAKMRHQVSMVKGDAEEMADHWYFDL
                     LSKLPEDLKSFRPAKKILTKLQKFGENLDLRIRPHVLLKVLQDLRIWELCSPDIAVAI
                     EFVREHIIHMPQEDYVNWLQSRVNMPIRHRPILT"
     exon            503..582
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            583..753
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            754..861
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            862..969
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1060
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1277
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1362
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1363..1434
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..1497
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..1620
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1621..1752
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1753..1942
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
     exon            1943..2224
                     /gene="Ccdc60"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccgagccc catggtgggg cccgccttag tccctggtct cgctggccga gggtgggact
       61 tttttctgta gagttttatt tttttttcaa tttacatttt attttgcgta taggagaaac
      121 atatctcctc ctttaaaata gggaagactt ataaaactga ttttgtgcga gttaaatagt
      181 ctcaggtttg cctgctcggg cctagtcgga cttctttacc cagatgctca gctttaaaac
      241 aagtcctcgg agagaaacct ctttgcagtc cctgaacttg ggacttgggg acctggtaga
      301 actttctgga ctgtttcaca ccagtgagtg ttgaaggcaa gattctggga aaagcaacaa
      361 aaagcctttc agtggaggta ccggcttaaa gactgaagtt atttttttcc tcaagatgac
      421 caaagcgcca gccaccaaaa agttacaaag agtccccagc aaggccattt ggctcttttc
      481 tggctcagat cagctgaccc aggcctcaga caagacggtg aagagcacca agtctatgga
      541 caaggagata gtaaacctca aaaaggatct catccgaagc cgcttcctga tccagtgtgt
      601 gaagataggc cgtggctact tcaccatgct gcaagaggaa actgccttta aaaagcatca
      661 gcagcatctc aagaagctgc aggaagaaga gttaaacaag ttccagccag ccaagaagta
      721 ctcggacatc caatgcagag acactctgct gaccacctac gaatacgaaa agatgaagaa
      781 gttggaggcc ggcatcatca tccgcccgtt cacacccatc cacaactgta tcatggcgcc
      841 ctccctgcct gagtctcacg tggatcccct cttccgccag ctatgtgctc tccactggct
      901 tctagaggcc ctgactatcg accacaccca ccacaccatg aggcctgtga ttgcctgttg
      961 gaaccccaag gaccccggtg gcagcaagag cacgataaag aagattaaca aggacaagtc
     1021 catggggcag aggtgggatc acttcgtcac ggcacccaag accaagaaat tcaaagcccc
     1081 tgccatccgc agcttagcca cccgaaaacc cagcaggcga ggctccgccc tcagcctgac
     1141 tcggaccagt gggggctctt ctccccagag cagcatgatg tcagtgaacc ccagctctga
     1201 cgagcccacc ggcagcaaag acatcgaaga caacgagtca tcctccacta agccggaaga
     1261 ggaagttctc cacttcagct tacagaagct cctggagatg gtccgggaag acgcccgaag
     1321 aaccatcctg atggagaccg agatgcaaaa gaaagccccc agcatcctgt ctttagtcaa
     1381 gcaagtcaag agtgactatg ggtggaagga ctggcagacc acacacaagt ccagtgagcg
     1441 gtccagcact acgagtggag aaagccacat ccaggtgacc cagaagaagt caaagggccg
     1501 agctaaccgg gacatcatct attgcaagac agggatctgt aacaccatgc gagccaagtt
     1561 ttacagcgta gcccaggagg ctggcttctg cctgcaggac aagatggaaa tcctcaagaa
     1621 gcgccaagag gaacgaggcc tccagaagtt ccactccttt attgtcacct cgaacttcca
     1681 gaaggacata gcaaagatga ggcaccaggt ctcgatggtg aagggagatg cggaggagat
     1741 ggccgaccac tggtactttg atctgctgtc caaactccca gaggatctga agagcttccg
     1801 gccggccaaa aagatcctaa caaagctgca gaagtttggt gagaacctgg acctcaggat
     1861 ccggccccac gtcctcctga aggtgctcca ggacctacgg atctgggagc tgtgctcccc
     1921 agacattgca gtggccattg agtttgtgag agaacacatc attcacatgc cgcaggagga
     1981 ttacgtcaac tggctgcaga gcagggtcaa catgcccatc cggcaccgcc ccatcctgac
     2041 atagaggggc cggtccccgt ggaggagggc aagccaacgc catgtcccta agcccagcct
     2101 gtgccatagc ctcctctcct ctctcacgga cgcacggcat ggagcagtga gatgggttga
     2161 agacactttt aacattaaag ttgttggaga gggtggtccc aggtggccct cccctccctc
     2221 acca
//
