LOCUS       XM_001077030            5422 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 6
            (Ccdc6), mRNA.
ACCESSION   XM_001077030
VERSION     XM_001077030.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001427373.1.
            
            On Jan 21, 2021 this sequence version replaced XM_001077030.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5422
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5422
                     /gene="Ccdc6"
                     /note="coiled-coil domain containing 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 39 ESTs, 16 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 222 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:691155"
                     /db_xref="RGD:1587433"
     CDS             129..1541
                     /gene="Ccdc6"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 6"
                     /protein_id="XP_001077030.1"
                     /db_xref="GeneID:691155"
                     /db_xref="RGD:1587433"
                     /translation="MADSASESDTDAAGGGPAAMQSSCSATSGGSGGGGGGKSGGIVI
                     SPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEE
                     EFISNTLFKKIQALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQ
                     EFQVNKLMKKIKKLENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLE
                     AEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQH
                     SEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMS
                     AQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRAGTSYYNSPGLH
                     VQHMGASHGITRPSPRRSSSPDKFKRPTPPPSPNTQSPVQPPPPPPPPPMQPAVPSAA
                     TTTQPAPSQAQHPVHPSSQP"
ORIGIN      
        1 ccgcgccgcg ctctgagctc ccccgctccc ccgctgccgc gcgcccggcc ccgcgcccac
       61 tcgccgcgcg cccggccctt ggcgtccccg ctccccgcgc ccggctcccc gcgcccactc
      121 gccccgccat ggcggacagc gcgagcgaga gcgacacgga cgcggcgggc ggcggcccgg
      181 cagccatgca gtcgtcctgc tcggcgacct cgggcggcag cggcgggggc ggcggcggga
      241 agtcgggggg cattgtcatc tcgccgttcc gcctggagga gctcaccaac cgcctagcct
      301 cgctgcagca ggagaacaag gtgctcaaga tcgagctgga gacctacaaa ctcaagtgca
      361 aggcgctgca ggaggagaac cgcgacctgc gcaaagccag cgtgaccatc caagccaggg
      421 ctgagcagga agaagaattc atcagtaaca ccttattcaa gaagatccag gccttgcaga
      481 aggagaaaga aaccctcgcg gtgaactatg agaaggaaga ggagtttctc accaatgagc
      541 tctcccggaa actgatgcag ctgcagcatg agaaggcaga gctggagcag cacctggagc
      601 aggagcagga gttccaggtc aacaaactga tgaagaagat caagaagttg gagaatgaca
      661 ccatctccaa gcagctcacc ttagagcagt tgagacggga gaagattgac ctggagaaca
      721 cgctggagca agaacaggag gcgctggtaa atcggctgtg gaagaggatg gacaagctag
      781 aagctgagaa gagaatcctc caggagaaat tagaccagcc tgtgtctgct cccccgtcgc
      841 ctagagacat ctccatggag atcgactctc ccgagaacat gatgaggcat atccggttcc
      901 taaagaacga agtggagcgc ctgaagaagc agctgcgggc cgcccagtta cagcattcgg
      961 agaagatggc ccagtacttg gaggaggagc ggcacatgag ggaagagaac ctgcgtctgc
     1021 agcggaagct ccagagggag atggagagaa gggaagccct gtgtcgccag ctctccgaga
     1081 gcgagtccag cttggagatg gacgatgaga ggtatttcaa tgagatgtct gctcaaggat
     1141 tacgacctcg cactgtgtcc agcccaatcc cttacacgcc ttctcccagt tcaagtaggc
     1201 ctatatcacc cggtctttcg tacgcaagtc acacagttgg cttcacgccg ccaacgtcgt
     1261 tgactcgagc tggaacgtcc tattacaact ctccgggcct ccacgttcag cacatggggg
     1321 cctcccatgg catcacaagg ccatcgccac ggagaagcag cagccctgac aagtttaaac
     1381 ggcccacgcc acctccgtct cccaacacac agagcccagt ccagccgcct ccaccaccac
     1441 ctccgccccc catgcagcct gcggtcccct cggcagccac caccacgcag cctgccccct
     1501 cgcaggcgca gcatccggtg cacccgtcct cccagcctta atgcatgagc ttagtcagaa
     1561 tctccagttg ggactcgtct gatggagcca ccgtctcaac gccaaaggct tctttcccgg
     1621 cgtactcgga tctgatgcgt ttgcactgag gttatctacc ttccctcctc attgtgtcgt
     1681 gaatgtccgt cggaaacgca gccaacattg cgggtccgca acactaacca gacgactttc
     1741 tccaccggtg ttttacttga atctccgtgt ctgtcattcc ctggctggaa cctttgctgt
     1801 ctggtatctg gtaatgagca gcgtgcaaac cctacctacc cctggggggc ccccagggct
     1861 gctttttctc ggcttttagg tttgtaaaat aagaagggag atcttttttt ataactattc
     1921 tctgtgaatt tgcaggaaaa tgaccgagct gttagaaacc ctcctcctcc gggtcagtga
     1981 catttaccaa acataccaag aattcagcac tacagttcag acctttgcag actaactcac
     2041 tgtaggattg gaagttagat gaaccggtgc ccacaacatg tagtctagag ctttctacag
     2101 acacactttt tacagattgt tttccgacgt aaattgacca ccgcgtccct tgtaaaaaca
     2161 gcctacggaa acaaaccaca cagctgttaa tctccccacg tgcgtgggac aggaattatt
     2221 acctattaag atgtgatttt cttttttcct ttctcaatgt taatccacct aagccagtac
     2281 cctctgacat gagtggatag atgccttccc accagtgttc ttgatggcca actggaatgt
     2341 aggcttagat ctctgctgca ggggccgtga gattgtaaca gagccagtgc ggctaaccct
     2401 cccattcttt tgtgttgtcc cgagacagag ggtgtaaacg agtatcttcc aggtgcaaaa
     2461 atgctgttgg gaaagacctg tctgaagtgt aggcaacacc ctagtgtgat ggcggaatca
     2521 ggagtgcagc aagcagagga tctctccggg ccctgacgcg tgctcacttt gcccggcgtt
     2581 aaacaaggag agcaccatgg aggttctgaa ctggattgcc attcattcag cacaaataaa
     2641 tccttccgtt tcacagggtt gtggggtggg tgggggacac caagtggctc ttttgtgacc
     2701 tttgtctctg tctgtccttg gttactttgt gcttttatag tcaagtgctt ccccctgcct
     2761 gtgtttgcat atttatatat gccgtggatg gaaataactt actagagaat gtatatttta
     2821 tgacgagaag cgtgactctg ttggatataa tcagaggact gaaaaattaa tttatcagta
     2881 atttttaaga gttcatgttt gtggcaacca tctctaacag cagctcctcg tggaacacac
     2941 tcccgagaac aaggaatacc ctggtgacat tgtagataat taatattgta cagtctagaa
     3001 acctccattt ttgccttcga atgcatattt taagagctaa cagattggaa aagtgttatt
     3061 ggataatagt gtttgacagc attgtaagag cttgagagta agaatcactg taggagcttt
     3121 tcactcttcc cgtccacccc taaactggga tcgtcaccct ccagcgacca ggaagaaact
     3181 gtgggcctac aaaagttcta cttatgaggt gtgcgagtgc gacgttcagg ccgtggtgcg
     3241 gttagcaggc acgaggtgga gtctgatatc tcctgtcaag gtgttaggtt ttcagtgtca
     3301 gaccaaaccc cgggcatttc cagcagttcc ccgaccctct tggtacatga ccattccagg
     3361 gaaattctga ggctaggcag aattcttcct tcacggtaca gtcttggttt gtcttttttt
     3421 tttttttttt tttcctttcg agagaaatac ggtatgtgtt tacaagaatc ttttctggga
     3481 ttgtagattt cagtaccgct ggctagcagc atatcctcca gcacataggt ccgttctgga
     3541 aaggtcttcc ctccacgtca gttgagttac ctcctagaag cacaagcgtg aaggcgatcg
     3601 gaggagcctt tgagaggcag gttcttgacc ttcaggcttg acccagaaag tgtacttcag
     3661 attcctctcc agccatcacc tcaactcaaa cccaaccctt cctaacagca gttgctatct
     3721 cagtcaccgg tccctgcagg tgttaagaac caaaagaaca aacactagga tctgaacgta
     3781 gagtgttttg tgtcagtttt gaagcacgta gcgatagaac cagagcccct agggacagga
     3841 gccccactac tgtgggctgg acgtggcttc tataggttca gttcccctac tctctcatag
     3901 gctaacgcta gatgagaatc tgtagccatc ctcagcgggt gagagcaaca gtaaccttca
     3961 gtggcttcat ttcctgtcct gttgacagag accctcgggt accactgtgc tgctaatagg
     4021 gccaggcctc tgttccccga tgacctcgcc tttgtacaga accaagtcca cgcacccagc
     4081 acctctgggt tcttaactgc tttctctcgt caagcgtgct ggtattctag acagaacttt
     4141 tggcaggcat ggaggtgttt taagattttt tttttttact taaaatgtct ttgtcgaccg
     4201 gaaggacttt tagattctgg gatcatgaga cacctgccag aaggtggctc tcgacggctc
     4261 gtgctgctgt gccttcgtca ttggcttctg attcaaccag aaataactga taatgtgaat
     4321 ctttgtcgat ccctcagttg taggtaaacc gtattcccca ctgttaggtg aaatctgccc
     4381 tgtgcaaagc cctgcgtgta gagataaccc aggaagtcgg gaacgtgtgg cagtgcgtgt
     4441 tttcagaaag ttttattttt tagaatgcag aaggaagttt tctttgtggc ttgatcttcc
     4501 gtctagtatc tgtctaatag gttaaccgat gccgagagct tcgtagcgat gcctaccaaa
     4561 gacatgcgta gtaaaccttc tatttccaaa ttattcaaga gccagccgtt gatgctgctt
     4621 cacggttctt tctcaggagc catcgtgaga gactgaaaca tgcttacgag cttttttttt
     4681 tgtttgtttg ttctaagttt taggtctttt tttttttttt aaatttttga ttaaaatgtg
     4741 ttagcctaac atgttgggga gcatttccca gaatgctcgg cagttgtgag tactggccac
     4801 accccaggtc acctcttgcg gagtgatcgg tggggtcctc tgtgcatgct agcaagggtg
     4861 ctgtgcgcgt gtgcgtgtac gtgtgtgcat tcatgcctta acttgggtta ccgctcagct
     4921 ttgctgtctg acctggtcct cgccatcatc agattgcatc gtgcaacttg atctgaactt
     4981 cattctggtt aaaaaaaaag agagagagat aaaaaaacag aaaagcaagg ttgcaggcag
     5041 cacaggctgg agtgcattcc tttggaagaa tgtctgctcg gacggaccct gagatgtctc
     5101 cacagacttt atttgggact tagtttggga agaaagccga ctgtcgattg ggcagatgtc
     5161 gacaaggacg agggggagag ccggaatgct agcacgccct ctgcctccac ataactcgtg
     5221 tgctctgtgt gttgtctggg tagcttgtct gcggcttaac tagcttggag ttcaggtaac
     5281 ggtggcaatc ccgacattca tctgttggag tttagagaga tgtaagatgt ccagttactg
     5341 tcttatttac tttatgttga tcagtcttta atacatgtgc tgaatcagaa aaacctaaat
     5401 aaagataatt ttttaaaacg ta
//
