LOCUS       XM_039087556            6192 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 57
            (Ccdc57), transcript variant X1, mRNA.
ACCESSION   XM_039087556
VERSION     XM_039087556.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087556.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6192
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6192
                     /gene="Ccdc57"
                     /note="coiled-coil domain containing 57; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:688324"
                     /db_xref="RGD:1590047"
     CDS             2584..6015
                     /gene="Ccdc57"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 57 isoform
                     X1"
                     /protein_id="XP_038943484.1"
                     /db_xref="GeneID:688324"
                     /db_xref="RGD:1590047"
                     /translation="MCLWPLQFQPCRPILQSSTVTMLPPCSERELSELLAQKEEEWRA
                     LQAHRAQLQEAALQATQNRLEEAQGKLRRLQEDFVYNLQVLEERDRELERYDIEFTQA
                     RRREEAQQAEASELKIEVAKLKQELTREARHMEELRHQHKLMLQEHRLELERVHSDKN
                     SELNHQREQYENLKWKLERKLKELDGELALQRQVHKTLEEIYSLLSEVFLNVCYRLVA
                     LQARGCARIPVMPVMLALTERRTPWDSSLPVDVMKQEWVWLDSSTELLQEFESEAQRR
                     EHEFQLRADDLSNTVLTHELKVKLLNKELQALKEAGAQATESLQKAESEHIELERKLQ
                     DHARELQDLEAMKDARIKDLEKKLHSVQLAKKKAEETFRRKHEELDRQAREKDTVLAA
                     VKGAHAEQLQTLDAKVLELQFRCETLEGQLRRAEWRQAEDSKERNSLTDKEFGDRSTC
                     VLSMYWHSVITSVPSGLPSRFREDAAALKAAWDAQIAQMSKEAVSKDLQIQALQEEEM
                     KLKAQVAKSQQDIDRYKQQLSLAVEREQSLEREQVQLGLDWQRRCDDIECNQIQRSET
                     LIQGLTKARDQVAAKLQETERALHKQETLLKAVSLERDQAMETLRTHGLLPGQEAQVP
                     PQPHEGEIRTDSPSSEIQRLQEQNAGLRNAVSQMRKEMEMLSGHLPFAQSEERSNANP
                     EPKAGEDSAPPDYVLALEAEMQNLKHELKALEEQLQGTGEPVKTSMATADPHHGAHNS
                     AEAADAAPADQTLITLALRKLGDRVHLLNLLVTQLKKKLRQKPLELVAVQQEIPSEVD
                     QVHLEVLELQKQVAELRKHLKMTQPQGEPSYIKQLQREGLADWHPMGMEDQTESPTFL
                     QEGAQPPQTTSVSHLQRKLKDAARKILNLLLEREQLLEMGNRLRAEQGHAKGKLTPCP
                     GPPTSEPQDPREVPERPLDRGPPLGQLQPHSTTQDPRHTKRKCVSEYAGKNQPHSAQV
                     VNKNSTPQGHKAGMASRPVQKQHRIPTETWKSVYQKENRTPKLPQAQEVPEESDHHTH
                     RSSSLASSSLLDTWRLLDLGSSLSGVPSQDNSAAECPAPLGPSCFQKVSRSPVPTQRV
                     SRSPVPTQRAFAVKGLKMEAQPKASHPRPSKSHPAKPANCQPQRHPRIRNYNLKD"
ORIGIN      
        1 caatgctgct ctgttggcag acagtctcct agacaccatg cacactgcag tggcctacct
       61 tcctccagag gcttctcctg tagctcccca agactatgtg ttgaatgatt agggttccag
      121 tgctctaggt ggagcagccc ctcagttagg cttcataaag gaaccccgta gccatgggga
      181 atgctagtta ccttcctcac tgctctgaca agagctgttt aggaaggagg gtctcctggc
      241 tcacagagag catagactgt catggcagga gtgtgaggcc accaagatac aggcatcggg
      301 gatgaagcaa tgaagagtca ggcctgttag tgagatgacc agaccgttgc gtaggatgca
      361 ggaactgaac agagctgtag ggtggatgcc aggcagacag gtaggcaggc ggcaggcgtc
      421 tcctgaactc aagtgaaggg tggctgtgtg gcagttctga gaagccaggc ggccgtgacc
      481 ggttgtgaag ctagagctta tgccaggtga gcagcaggat aaacaaagct gacccagatt
      541 gtaacctgct cctaggaact ccatctcagc acactcaagg agctctgaga tctccagtga
      601 ttggcactgg tgggccagcc tcttctggat gcagctaggg ggacccttgc tccaaatttc
      661 gttcttggca gcactcagat tcgctatgcc actgtgctct cctcctgtgc ccgagaatca
      721 gtgactgcac agccagtgtt ttgtttctgt ctctatatag cccttgcttg gtccctaatg
      781 ggttgaggac cctgaccagc tttgagaagc tttgtcaggc ttgtccccta catgctgata
      841 gaagcctctc tgtgggagac cagcagggca gggctagggt tgtaagttgc tgtgtgcctt
      901 gaggccccta ccaaataccg cctggtccat agaccttcca ggccctcggt gattcagtgc
      961 ttacaggaca cacacagagc tgtgctcact gttggatgga aaaccccttc tttcctgtga
     1021 aatacactct tggttttttt agtccaggtg atgtataatg atttggactg taattctaaa
     1081 ttttattcat ttatttttat gtctctatgc atgttcttgt ggaagtttta tgtgtaccat
     1141 gtgtttgaag gaacctgtag acatcagaga aaggcatcag agcccctgaa actggactta
     1201 caaatgcgtg tgagctgcca tgtgggtgct ggtaaaggaa ttgggtcctc tacaaggaca
     1261 gcaagtactc ttaaccatgg agccatctct ccaccctgac tgtgactagt tcttcttatc
     1321 aataatttca tgagttaaat tttctgtaag tagtattgcc tatataaaga gcagctattg
     1381 gcttagcaac tccggagttg atgtaaacgc ataacacagc acaccataat acacgtgagc
     1441 tcatccatgt tataccatat acaccatgct gtaatatact cacaaacatc cacagcacca
     1501 cacactcata catgtacacc acggtacaac acacgcacat acacactaca cggcacaaca
     1561 cacacacaca cactacacgg tacaatacac actacacaca cgtacacacc ccccatacac
     1621 acatcatgtc tttctccatg cacacataca gcacagcaca agagcaaccc ctgtttttga
     1681 gttttatgtc tgtgatggcc tactcattgt tgatttgagt agaggtgagg taacctatat
     1741 taccttcact ctgggctatc tcagggtgat ggccatgatt atttttacct ctctgtaaat
     1801 atactataca taagactagt gagttgaagt gatccaggac agtgtgtttt tctttctaaa
     1861 gaatacccat ttacagagtc atactgccgc cttctttggg gtgacagtga tacaaaactg
     1921 ttactgccag aagcctccat gtgccctgga aaagactgtt gggcggttgg ggatttagct
     1981 cagtggtaga gcgcttgcct agcaagtgca aggccctgtc cccagctccg aaaaaaaaaa
     2041 tgaaaaaaaa aaaaaaaaag actgttggaa gatggtgaca ttagagaaga gttctcatgg
     2101 ctcccctctt gactcccctc atggctctcc tcatggctcc cctcgtggct cccctcgtgg
     2161 ttcccctcgt ggttcccctc atggctcccc tcgtggctcc cctcgtggct cccctcgtgg
     2221 ctcccctcgc ttacattaca cttggctctt gtgcctaggt gatggtgccc agcattgttg
     2281 accttatgtc cttccctgtg ggtatccttg ggctgactat aaataaagcc aggagcctgg
     2341 ctacaagcta aatggctctg tatacagaaa agaatccctt ttatgtagag tactggctgc
     2401 aaggcctcac tagaaccagt aatagtctgt agtgtgcctt gataagaaac agtctcttcg
     2461 gggttgggga tttagctcag cggtagagca cttgcctagc aagcgcaagg ccctgagttt
     2521 ggtccccagc tccaaaaaaa agaaaagaaa agaaaagaaa aaaaaaagaa acagtctctg
     2581 ctaatgtgct tgtggcccct gcagttccag ccctgtaggc ccattcttca atcctccact
     2641 gtcaccatgc tgccgccatg ctcagagcgg gaactgagtg agcttttggc acaaaaggag
     2701 gaggaatggc gagccctaca ggcccaccgt gcacagctgc aggaggcagc tctacaggct
     2761 actcagaacc gcctggagga ggcacaaggg aagctgaggc gcctacagga ggactttgtt
     2821 tacaaccttc aggtgctgga agagagggat cgtgagctgg agcgctatga cattgaattc
     2881 acccaggccc gcagacggga ggaggcccaa caagcagagg ccagtgagct caagatagag
     2941 gtggccaagc tgaaacagga actcaccaga gaggccaggc acatggagga gctgcggcat
     3001 cagcataagc taatgctgca ggagcaccgc ttggagctgg agcgtgtcca cagtgacaag
     3061 aacagcgaac tcaaccacca gcgggagcag tatgagaacc tgaagtggaa attggagaga
     3121 aaactgaagg aacttgatgg tgagcttgct ctgcagagac aggttcacaa gacgctggag
     3181 gagatttact cactcctttc agaagtgttt ctgaacgtat gctacaggct ggtagctctt
     3241 caggcccggg gttgcgcacg gatacctgtc atgcctgtca tgcttgccct caccgagcgg
     3301 agaacacctt gggacagttc actacctgtg gacgtgatga aacaggagtg ggtgtggttg
     3361 gactcaagta cggaactgct gcaagaattt gaatctgaag ctcagagaag ggagcatgag
     3421 ttccaactga gagctgatga cttgagcaac actgtcttga cccacgagct caaggtaaag
     3481 ctgctaaaca aagagcttca ggctttaaaa gaagctggag cacaggcaac agagagtctg
     3541 cagaaggcag aatcagagca cattgaatta gagaggaagc tacaggatca tgcccgggag
     3601 ctacaggatc tggaggccat gaaggatgct cggataaagg acttggagaa gaagcttcac
     3661 tctgtacagc tggccaagaa gaaagctgag gagactttca ggaggaaaca tgaagagctt
     3721 gaccgtcaag ccagggagaa agacacagtg ctagcagcag tgaagggtgc ccatgcagag
     3781 cagctgcaga cgctggatgc caaggtcctg gagcttcagt tccgatgtga aacgctggag
     3841 ggacaactgc gaagggctga gtggaggcaa gctgaggaca gcaaggagag gaattccctt
     3901 actgacaagg agtttggtga ccgttccacc tgtgtcctga gcatgtactg gcattctgtg
     3961 ataacctcag tgcctagtgg cttgccctct cgatttcgtg aagatgcagc agctctgaaa
     4021 gctgcctggg atgcccagat cgctcagatg tccaaggaag ctgtttccaa agaccttcag
     4081 attcaggcac tacaggaaga ggaaatgaag ctcaaagcac aggtggccaa gtcccaacag
     4141 gacatagaca ggtacaagca gcaactgtcc ctggcagtgg aaagggagca gagcctggag
     4201 cgcgagcagg tacagctagg cctcgactgg cagcgtcgct gcgatgacat tgaatgcaac
     4261 cagatccaga gatcagagac tttgatccaa gggctgacca aggccagaga tcaggttgct
     4321 gctaagctcc aggagacaga gagggcactg cataagcagg agacactgct gaaggctgtg
     4381 tcgctggagc gagaccaggc tatggaaact ctgcggacac atgggctcct ccctggacag
     4441 gaggcacagg tacctcctca gccccatgaa ggagaaataa ggacagattc tccatctagt
     4501 gagatccaga ggctgcagga acagaatgca ggtctgcgga acgctgtttc acagatgagg
     4561 aaagagatgg aaatgttgag tggtcatctt ccctttgccc agtcagaaga gcgttcaaat
     4621 gcaaaccctg agcccaaggc tggagaagat tcagcccctc cagattatgt tctggccctt
     4681 gaagcagaaa tgcaaaacct aaagcatgaa ctcaaggcat tggaagagca gctacaaggc
     4741 acgggagagc cagtgaagac gtccatggcc accgctgacc cacaccacgg cgcccacaac
     4801 tctgcagaag cagctgatgc agccccggca gaccaaacac tcattacatt ggcactcaga
     4861 aaacttggag acagggtgca tctcttgaac ttgctagtga cacagctcaa aaagaagcta
     4921 agacagaaac ccctggagct ggtcgctgtc caacaggaga tccccagtga agtggaccag
     4981 gtacacctgg aggttttaga gctgcagaag caggtggctg agctaaggaa gcatctcaag
     5041 atgacacaac cccaaggaga gccttcatat atcaagcagt tacagagaga gggtctggca
     5101 gactggcacc ctatgggcat ggaagaccag acggagtccc ccactttcct ccaggaaggg
     5161 gcacagcctc cacagaccac atctgtgtcc catctgcaaa gaaaattaaa ggacgcagct
     5221 aggaagatac tcaacctcct cctagagagg gagcagctcc tagaaatggg aaatagactc
     5281 cgagctgagc agggccacgc gaaagggaaa ctgactcctt gcccaggtcc tcccacctct
     5341 gagccccagg atccccggga ggtacctgag agacctttgg atcgtggccc acctttggga
     5401 caattgcagc cccattcaac aactcaggac cccaggcaca ccaagagaaa atgtgtttct
     5461 gaatatgcag ggaagaatca accccactcg gcacaagtgg tcaacaaaaa ctccacccca
     5521 caaggccaca aggcaggaat ggcatcaagg cctgtgcaga agcagcatag aatccccaca
     5581 gagacttgga agtcagttta tcagaaagaa aacaggactc caaagctacc acaggctcaa
     5641 gaagtccccg aagaaagtga ccaccataca cacagatcat cttcattggc cagcagttcc
     5701 ctcctagata cctggaggct gctagacctg ggatccagcc tttcaggcgt cccctcacag
     5761 gataactctg ctgcagagtg tcccgcacct ctgggaccca gctgtttcca aaaggtcagc
     5821 cggagccctg tccccacaca aagggtcagc cggagccctg tccccacaca aagggccttt
     5881 gctgtcaaag ggctaaagat ggaagctcag ccaaaagcct cacaccccag acccagcaag
     5941 tcgcatccag caaagcctgc aaactgccag ccacagcggc acccaaggat ccgcaactac
     6001 aacctcaagg actagatctc agcctcctgc agggcactgc acaggggcct ccaccttggt
     6061 ccacggggcc tgtgcatgta caagttggga gtgagtacac acataataca caggtggact
     6121 gtgacacagg acagactccc aaatgctggc ctgcctgata ctaaagagaa attaaaaccc
     6181 tcctccatct gc
//
