LOCUS       NM_001013974            3289 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 47 (Ccdc47), mRNA.
ACCESSION   NM_001013974 XM_221036
VERSION     NM_001013974.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3289)
  AUTHORS   Morimoto,M., Waller-Evans,H., Ammous,Z., Song,X., Strauss,K.A.,
            Pehlivan,D., Gonzaga-Jauregui,C., Puffenberger,E.G., Holst,C.R.,
            Karaca,E., Brigatti,K.W., Maguire,E., Coban-Akdemir,Z.H.,
            Amagata,A., Lau,C.C., Chepa-Lotrea,X., Macnamara,E., Tos,T.,
            Isikay,S., Nehrebecky,M., Overton,J.D., Klein,M., Markello,T.C.,
            Posey,J.E., Adams,D.R., Lloyd-Evans,E., Lupski,J.R., Gahl,W.A. and
            Malicdan,M.C.V.
  TITLE     Bi-allelic CCDC47 Variants Cause a Disorder Characterized by Woolly
            Hair, Liver Dysfunction, Dysmorphic Features, and Global
            Developmental Delay
  JOURNAL   Am J Hum Genet 103 (5), 794-807 (2018)
   PUBMED   30401460
REFERENCE   2  (bases 1 to 3289)
  AUTHORS   Yamamoto,S., Yamazaki,T., Komazaki,S., Yamashita,T., Osaki,M.,
            Matsubayashi,M., Kidoya,H., Takakura,N., Yamazaki,D. and
            Kakizawa,S.
  TITLE     Contribution of calumin to embryogenesis through participation in
            the endoplasmic reticulum-associated degradation activity
  JOURNAL   Dev Biol 393 (1), 33-43 (2014)
   PUBMED   25009997
REFERENCE   3  (bases 1 to 3289)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 3289)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   5  (bases 1 to 3289)
  AUTHORS   Zhang,M., Yamazaki,T., Yazawa,M., Treves,S., Nishi,M., Murai,M.,
            Shibata,E., Zorzato,F. and Takeshima,H.
  TITLE     Calumin, a novel Ca2+-binding transmembrane protein on the
            endoplasmic reticulum
  JOURNAL   Cell Calcium 42 (1), 83-90 (2007)
   PUBMED   17204322
REFERENCE   6  (bases 1 to 3289)
  AUTHORS   Foster,L.J., Zeemann,P.A., Li,C., Mann,M., Jensen,O.N. and
            Kassem,M.
  TITLE     Differential expression profiling of membrane proteins by
            quantitative proteomics in a human mesenchymal stem cell line
            undergoing osteoblast differentiation
  JOURNAL   Stem Cells 23 (9), 1367-1377 (2005)
   PUBMED   16210410
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085824.1.
            
            On Apr 20, 2005 this sequence version replaced XM_221036.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085824.1, SRR8487231.126300.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110, SAMN16676811
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3289
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..3289
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /note="coiled-coil domain containing 47"
                     /db_xref="GeneID:303606"
                     /db_xref="RGD:1308813"
     exon            1..164
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            165..445
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..1633
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /note="coiled-coil domain-containing protein 47; PAT
                     complex component CCDC47; PAT complex subunit CCDC47"
                     /codon_start=1
                     /product="PAT complex subunit CCDC47 precursor"
                     /protein_id="NP_001013996.1"
                     /db_xref="GeneID:303606"
                     /db_xref="RGD:1308813"
                     /translation="MKAFCAFCVVLLVFGSVSEAKFDDFEDEEDIVEYDDNDFAEFED
                     VVEDSVTESPQRVINTEDDEDEATVELEGQDEGQEGDFEDADTQEGDTESEPYDDEEF
                     EGYEDKPDTSSNKNKDPITIVDVPAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKN
                     SRLAQAWFNSHRELLESNFTLVGDDGTNKEATSTGKLNQENEHIYNLWCSGRVCCEGM
                     LIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFAVGTRKALLRLQKEM
                     QDLSEFCSDKPKSGAKYGLPDSLAILSEMGEVTEGMMDTKMVHFLTHYADKIESVHFS
                     DQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDK
                     AKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDP
                     EKQRRLEEAALRREQKKLEKKQMKMKQIKVKAM"
     exon            446..553
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            554..728
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            729..850
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            851..916
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1018
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1129
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1215
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..1274
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1384
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1552
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..3263
                     /gene="Ccdc47"
                     /gene_synonym="RGD1308813"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgaagagtag ggtaccgtga ctgagctacc tgctctgggc tgttcagtga cctcgcggcc
       61 cgcagataaa tctttgcgac ctgaaggcag aaaccagaca aaggcaggcc gggtggaggt
      121 ggtggcctca ggagccccgg gtccggtggt agcctcgggt gcagcttatt tttaaggtgc
      181 aatgaaagcc ttctgtgctt tctgtgttgt tctcttggtg tttgggagtg tctctgaagc
      241 caagtttgat gatttcgagg atgaggaaga catagtagag tatgatgata atgattttgc
      301 tgagtttgag gacgtcgtgg aagattctgt tacggaatct cctcagcgag tgatcaacac
      361 tgaagatgac gaggatgagg ccaccgtgga attggaaggg caggatgaag gccaagaagg
      421 cgatttcgaa gatgcagata cccaggaggg agatacagaa agtgagccat atgatgacga
      481 agaatttgag ggttatgaag acaaacctga tacctcttct aacaaaaata aagatccaat
      541 aacaattgtt gatgttcctg cacacctcca gaacagttgg gagagttatt acctagaaat
      601 tttgatggtg accggtctgc ttgcctatat catgaactat atcatcggga agaataaaaa
      661 cagccgactt gctcaggcct ggtttaactc tcatagagag cttttggaga gcaattttac
      721 cttagtgggg gatgatggga ctaacaaaga agccacaagc acagggaagt tgaaccagga
      781 gaatgagcac atctataacc tgtggtgttc tggccgagtg tgctgtgaag gcatgctcat
      841 ccagctgagg ttcctgaaga gacaagactt acttaacgtc ctggcccgga tgatgaggcc
      901 agtgagtgat caggtgcaaa taaaagtcac aatgaacgac gaggacatgg atacatacgt
      961 gttcgctgtc ggcactcgca aagctttgct gcgactgcag aaagagatgc aggatctgag
     1021 tgagttttgt agtgataaac ctaagtctgg agcgaagtat ggactgccag actctttggc
     1081 cattctgtca gagatgggag aagtcacaga ggggatgatg gatacaaaga tggttcactt
     1141 tcttacacac tatgctgata agattgaatc tgttcatttt tcagaccagt tctctggtcc
     1201 aaagattatg caagaggaag ggcagccttt aaagctgcct gacaccaaga ggacactact
     1261 gtttacattt aatgtgcctg gctcaggtaa cacgtaccca aaggatatgg aggctttgct
     1321 acccctgatg aacatggtga tttattctat cgataaagcc aaaaagttcc gcctcaacag
     1381 agaaggcaaa caaaaagcag ataagaaccg ggcacgcgtg gaagagaact ttctgaagct
     1441 gacacatgta cagagacagg aggctgcaca gtctcggcgt gaggagaaga aaagagctga
     1501 gaaggagcgg atcatgaatg aggaggaccc tgaaaagcag cgcaggctgg aggaagcggc
     1561 tttgaggaga gaacaaaaga agttggagaa gaagcaaatg aaaatgaaac aaatcaaagt
     1621 gaaagccatg taaagtggtc ctacgggcct gtcctcgatg ccgatgccgg aagctggaag
     1681 cgctgtgtct gccgagtcct cacctaacag tcacgtgttt ctggtgactc agagatcttt
     1741 atttcaccct ctccttttgg tttggagttc tacagaggtt agagatacat tgaaagggct
     1801 ttttcagcta tctccttcca gataatcaaa ttattttggt tattctctaa aaggaatggt
     1861 atataagtat gtgtagtttt acaatgttta aattataatg tgaatcatta gtgctttact
     1921 ttggtgtttg aagaacgatc atgaaatttc taggtaggtt gttgcttttt gtttaaactg
     1981 agagttgaaa tttctatgga gactgactct aacccaacac cctaagaata tctattggaa
     2041 ttgcacaata gccattgctt gtttttctgt gtccacatta aacttgtgaa aaaagtggaa
     2101 tctagaacac tgtatgtgat gacaaggtca gagacttaga acgtagtaca gcatatgttt
     2161 tgtgtggggg tggtgctgat ggcagtatga taggaagaga tccataggtg ttaggatact
     2221 gtaagtccat ggaggactct cgaggtaggt agtacaggag tggtttctca ttgcctgata
     2281 ctatgagcta atgacactga gtgctggatt tgaagtagtt atgtgcttat tttttctgag
     2341 caagaaatgc atgaataaat ggactgcgtc agctagccgg atcagcagtc agatggctgg
     2401 tctctgtgag gtcataatgg gtttcttgct tgctgcagcc tgtgaggttt tcatggagga
     2461 gctgatctgt cttatgagtg cgcttgttct ctgcctgctt ttatattgtc cacaaggccg
     2521 gtatgtactg tcttgaaaca cataaccatt gatatgcaca aatatgcttt taaaaagtga
     2581 gcttttttaa gtgattcaga attttgtctg actcgtgggg caggagcgat ggtggagaga
     2641 ggcccctctc tgtgcataag cattggcttg tcgagagctc tgcattttat aaatgcttcc
     2701 taccgagaaa gcatttctta agtctctgct tgtaccaggt agttcttgct ggggtgggaa
     2761 agggttgttt tgtgttggga gtgggtagtg gggtttggtt gacaatttct gtgttctgat
     2821 gccgcagtaa cagtgaggtg tggtgaaagc tgtgtgctgt tgccttgggg attacatggg
     2881 gtttttcatg tggctttgtc taggttaata gaaattatgc actgggatat acaggtgtag
     2941 ttaagttatt aaaaataaca caagattgaa tcactttaag gccatataat tttagactta
     3001 acattgtttt acaaatctta aagtacattt agagtcaaat tttatgtgct tagttattgt
     3061 ttaagtaata taagctttct gaaagtccca tatattggac cgtggcagct aattttgtaa
     3121 cttaagcatt catatgacta cctatgacat attaaactga ttgacaaaaa tctgagactg
     3181 cggctttgac tttttatagt tgtcctacaa gaatatgtat actgttctct tattaaaaac
     3241 attaaaaggt tttccttcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
