LOCUS       NM_001100728            2308 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 43 (Ccdc43), mRNA.
ACCESSION   NM_001100728 XM_001081522 XM_340915
VERSION     NM_001100728.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB792766.1 and BC091255.1.
            
            On or before Nov 21, 2008 this sequence version replaced
            XM_001081522.1, XM_340915.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091255.1, CO556153.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760494, SAMN16676786
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                CB792766.1         48-73
            27-2308             BC091255.1         1-2282
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..2308
                     /gene="Ccdc43"
                     /gene_synonym="RGD1311929"
                     /note="coiled-coil domain containing 43"
                     /db_xref="GeneID:360637"
                     /db_xref="RGD:1311929"
     exon            1..222
                     /gene="Ccdc43"
                     /gene_synonym="RGD1311929"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..693
                     /gene="Ccdc43"
                     /gene_synonym="RGD1311929"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 43"
                     /protein_id="NP_001094198.1"
                     /db_xref="GeneID:360637"
                     /db_xref="RGD:1311929"
                     /translation="MAAPSEVAAAVLGEGDGGGFGSWLDGRLEALGVDQAVYRAYILG
                     VLQEEEEEEKLDALQGILSAFLEEDSLLDICKEIVERWSETRDVTTKVKKEDEVQAIT
                     TLIEKQAQIVVKPRVVSEEEKQRKAALLAQYADVTDEEDEADEKADPGASTANIGSDK
                     SLFRNTNVEDVLNARKLERDSLRDESQRKKEQDKLQREKDKLAKQERKEKEKKRTQRG
                     ERKR"
     exon            223..310
                     /gene="Ccdc43"
                     /gene_synonym="RGD1311929"
                     /inference="alignment:Splign:2.1.0"
     exon            311..446
                     /gene="Ccdc43"
                     /gene_synonym="RGD1311929"
                     /inference="alignment:Splign:2.1.0"
     exon            447..505
                     /gene="Ccdc43"
                     /gene_synonym="RGD1311929"
                     /inference="alignment:Splign:2.1.0"
     exon            506..2283
                     /gene="Ccdc43"
                     /gene_synonym="RGD1311929"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtccggcagg acccggtccc cagcatggcg gcgcccagcg aagtggccgc ggcagtcctc
       61 ggtgaaggcg atggcggggg ttttggatcc tggcttgacg gacgtttgga ggcgttggga
      121 gtggaccaag ccgtttaccg cgcttacatc cttggcgtcc tacaggagga ggaggaagaa
      181 gagaagctgg acgccctgca gggtatcctc tctgcttttc tggaagaaga ttccctcctt
      241 gatatctgta aggaaattgt ggaacgatgg tcagaaacaa gggatgtcac caccaaagta
      301 aaaaaagaag atgaggtgca ggctatcacc accttgattg agaagcaggc acagatcgtg
      361 gtgaagccca gagtggtttc agaagaagag aagcagagga aagcagccct gttagcccag
      421 tatgcggatg tgacggacga agaggatgaa gcagatgaga aagctgatcc cggtgcttca
      481 acagcaaaca tcggttctga caaaagcctg ttccgaaaca ccaatgtgga agacgttctc
      541 aatgctcgga agttggagcg agactcactt cgggatgagt cccaaaggaa gaaggagcag
      601 gacaagctgc agagggagaa ggacaaacta gccaagcagg aacgcaagga gaaggaaaag
      661 aaaaggacac agagagggga acgaaagcga taacctcggc ccactctgct cctttcaccc
      721 atgaattgtt gtgtgtgtat ttaagagaac tgagactaat gtatttccca cagtttccta
      781 aggcttcccc tctgtttaca tgttcaaaag gaaaatcgca atcacttgta aatgtgccat
      841 gttttggtgg tgtgggcaat caattatagt tagtatcttt accaaagatc tggaattagg
      901 gtaacctttc tattttagta ctgaaaccct gtgctcttct gtctttttta aaacggtctt
      961 ccctcatttt gtataattag tcagttacag aaagctaaca tcctgaagga aacacaactg
     1021 ttccttcagt gttaaaaaag tacaaattgc ttctgaggca ttatttgccc taaaatatag
     1081 tgggcttttg ttttgagact gggtttcact ctatagccca ggctggcctt gaacttgccg
     1141 ctgtgtcctt gcctcagttt ctcagcttca ggattatgga cagaaatcac catgcctggc
     1201 atgtaactat ttttgaggct gaaatagcta atgaaaagcc ctatctagat ccagatttta
     1261 tatgacatca aattagggaa gtggagggaa ttatttggga tgtgttagat ctaagaattt
     1321 ttctaatgtg tcaacttggg ctcaggttgt agttgagtgc ctgcttagca tatacaaggc
     1381 cctgggattg agccccagta tggaagaaaa gacttaacaa gtatctttta aaagagagct
     1441 atgtattttt catgtagtct gtgattttaa agataatcat tttgttagat tttttttttt
     1501 tttttttttt ggtaatcatg agttcccttg catcccctct taattttaat cttgatttat
     1561 cctacaggca tgtccttcct accttttgac attttaaaaa cttgcaaaaa acaaatcatg
     1621 ttttaaaagt atgattttgt gttctgctga atttatagct atccttgact acgggttgga
     1681 catacctgca acatgagtag taagacctag caattcctgg tttagagaaa ctgaaggaat
     1741 taatcttaga gaaaaacact ggaaatcttg ctaacacagt acttaaaagt atatagttgg
     1801 tggttaaact tatgagtgaa tggaaaaacc gggagagtca agggtaaaca gaactctcca
     1861 agtctacttc tgtcacagcc acatctggtt gtaaataaag tccttcttta cttgactttg
     1921 ggcaatgggc atcaaaagcc tcaagagaac aatttctctg ataagattat tttctaccag
     1981 gggtcagaag actccattca caggccaagt ttggcccact ctttttttgt atggggcaaa
     2041 ctaaaatggt tttttacatt tttaagaggt tataaaagaa agacattcat gatcgagacc
     2101 atatgtggcc tataaaacct agtatttgga gaaagtttgt tgacttttgt atcattagct
     2161 acctttgtgc agaagaaaaa catggttaag gaaaggagat gtgctgcctc tttgtcctgc
     2221 aaccatggca ttgcaaaaat aaccaccttt ttcttttttt aaaataaact ttatttaagt
     2281 cagaaaaaaa aaaaaaaaaa aaaaaaaa
//
