LOCUS       XM_039080091            2226 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 38
            (Ccdc38), transcript variant X1, mRNA.
ACCESSION   XM_039080091
VERSION     XM_039080091.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080091.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2226
                     /gene="Ccdc38"
                     /note="coiled-coil domain containing 38; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:500823"
                     /db_xref="RGD:1564046"
     CDS             16..2118
                     /gene="Ccdc38"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 38 isoform
                     X1"
                     /protein_id="XP_038936019.1"
                     /db_xref="GeneID:500823"
                     /db_xref="RGD:1564046"
                     /translation="MQSLEETSCLRFIDLRPSVPVTFIANSWTLSPAHTGCVCASTKP
                     ATKEPGGRMASQLHVSRSSAEPGGRTPSQVHSARSSAEPGGRIPSQVHSARSSAEPGA
                     RITYQLHSSRSSAEPGARITSQLHTSRSSAEPGGRISSQLQTSRSSGDEAKDAELKKE
                     RPYKIFFKDLFLFKENEIAARKRERMKTHSMHIYQKTTFSSRMKSRSHLGQLAFFAEA
                     GSSSYEKLGLDPTLILRLTEGADRKRTVHEFINDQRDRFLLEYAVSTKKNTIKRFERL
                     IATKESQLKKAEKKLQDDALSFEEFLRENDQRSVDALKMAAQETINKLQMTSELKKAV
                     MEVQAIKSEIAKTEFLLKEYMKYGFFLLKLSPKQWQVQQSQKRVQSSKSNQVLPKILE
                     KFSICTSKRNNSTDSDRLSFSEDRSSKRGSLGGRRRKSTLGQDSRRSSVLARPESIAS
                     EDSLEYFIEDEIVEFDLMPEIYFKEPEELLQVLTELEEQNLTLVQYSQDVDENLEDVN
                     KRERFIQDKINNNISFLLEHKNMLKVSCEREEEKAAELELRSRLFNFGEFNSDAQEKL
                     IDSLSKKINQVYRVCIGDAEVGSLNAIQKLVKVESRLVELSDLIESIPKENVEAIERI
                     KQKERRQKLREEKMREKQRHQEERLKAALERAVAQPKKKLGRRLIYRSRPHSANKHEL
                     LLIGDPRSKSQEEEYFFS"
ORIGIN      
        1 atagcttgac cgcttatgca atcgttagaa gagacatcct gtttgcgctt tattgatttg
       61 cggccgtctg ttccagttac cttcattgca aactcatgga ctctttcacc agcccacacc
      121 ggatgtgtgt gcgcgtccac caaacctgca accaaagaac caggaggcag aatggcatcc
      181 cagttgcacg tgtcaaggag ctctgcagaa ccaggaggca gaacaccatc ccaggtgcac
      241 tcagcaagga gctctgcaga accaggaggc agaataccat cccaggtgca ctcagcaagg
      301 agctctgcag aaccaggagc cagaataaca taccagttgc actcgtcaag gagctctgca
      361 gaaccaggag ccagaataac atcccagttg cacacatcaa ggagctctgc agaaccagga
      421 ggcagaatat catcccagtt gcaaacatca aggagttctg gagatgaagc aaaagatgct
      481 gaactcaaaa aggaaagacc ctacaagatc tttttcaaag atctcttcct tttcaaagaa
      541 aatgaaattg ctgcaaggaa aagggaaaga atgaagaccc acagcatgca tatctaccag
      601 aagacgacat tttcgtcccg aatgaagagt cgctcacacc ttggccagct ggcttttttt
      661 gcggaggcag gtagcagctc ctatgaaaag ctggggctag accccactct gatcctcaga
      721 ctgacagaag gcgcggacag aaagaggacc gtccacgagt ttattaacga ccaacgagac
      781 agatttctac ttgagtacgc agtgtcgact aagaaaaaca caatcaaaag gttcgaaaga
      841 ctcatagcca cgaaagaaag tcaactcaaa aaagccgaga aaaagctcca agatgatgcc
      901 ttgtcctttg aagagttcct acgagaaaac gaccagagat ctgtagacgc tctcaaaatg
      961 gcagcccaag aaacaataaa caaactccaa atgacatcag agctcaagaa agcagtcatg
     1021 gaagttcaag caataaagag tgaaatagca aaaacagagt tcctcctcaa ggagtacatg
     1081 aaatatggat ttttcctgct gaagttgtct ccgaaacaat ggcaagtaca gcaatcgcaa
     1141 aaaagagtcc agtcatccaa aagtaaccag gttcttccaa aaatcttgga aaaattctca
     1201 atatgtacca gtaaaagaaa taacagcacc gactcggaca ggctatcgtt ttcagaagat
     1261 cgcagttcaa agagaggaag cctaggagga agacgtagga aatctacttt gggccaagac
     1321 tctaggaggt catccgtgtt agctcggcct gagagcattg cctcggagga cagtttggag
     1381 tactttatag aggacgagat agtggagttt gatctgatgc cagagatcta tttcaaggag
     1441 ccggaggagt tactgcaggt cctcacggag ctggaagagc agaatctcac cttggtccag
     1501 tattcccaag atgtggatga gaatctcgaa gatgtcaaca aaagagaacg atttatacag
     1561 gataagataa acaacaacat ctcgttcctt ctggagcata agaacatgct taaggtgagc
     1621 tgtgaacgag aggaggagaa ggctgcagag ttggagctga ggtccaggct cttcaacttc
     1681 ggagaattca attccgatgc tcaggaaaag ctgatagact cacttagtaa aaagattaac
     1741 caagtctaca gagtctgcat tggagatgct gaggttggca gtctgaacgc aattcaaaaa
     1801 ctggtcaaag tggagtctcg cctggtggag ctgagcgacc tcattgaatc tattcccaaa
     1861 gagaacgtgg aagcaatcga aaggatcaaa cagaaggagc gacggcaaaa gcttcgtgaa
     1921 gagaagatga gagaaaagca gagacaccag gaggagaggc taaaagctgc tctggaaaga
     1981 gcagtggcac aacccaagaa gaagttggga agacgactta tctaccggtc aagacctcac
     2041 tctgctaaca aacatgagct acttttaatt ggtgatccga gatcaaagtc acaggaggag
     2101 gagtattttt ttagttgaac aggatcctga agacacttat tagcaagttt gtatgtggat
     2161 gttggctctc agtgatgcac tactgagcta acagatccca gggatgcagt agacctttac
     2221 ctcaaa
//
