LOCUS       NM_001014091            3031 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 33 (Ccdc33),
            transcript variant 1, mRNA.
ACCESSION   NM_001014091 XM_236295
VERSION     NM_001014091.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3031)
  AUTHORS   Kaczmarek,K., Niedzialkowska,E., Studencka,M., Schulz,Y. and
            Grzmil,P.
  TITLE     Ccdc33, a predominantly testis-expressed gene, encodes a putative
            peroxisomal protein
  JOURNAL   Cytogenet Genome Res 126 (3), 243-252 (2009)
   PUBMED   20068295
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 9, 2022 this sequence version replaced NM_001014091.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083609.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-378               JAXUCZ010000008.1  67413108-67413485   c
            379-542             JAXUCZ010000008.1  67407312-67407475   c
            543-676             JAXUCZ010000008.1  67392727-67392860   c
            677-786             JAXUCZ010000008.1  67388201-67388310   c
            787-894             JAXUCZ010000008.1  67387043-67387150   c
            895-986             JAXUCZ010000008.1  67383723-67383814   c
            987-1107            JAXUCZ010000008.1  67382759-67382879   c
            1108-1237           JAXUCZ010000008.1  67375668-67375797   c
            1238-1371           JAXUCZ010000008.1  67374879-67375012   c
            1372-1443           JAXUCZ010000008.1  67373160-67373231   c
            1444-1599           JAXUCZ010000008.1  67361018-67361173   c
            1600-1762           JAXUCZ010000008.1  67336337-67336499   c
            1763-1854           JAXUCZ010000008.1  67335962-67336053   c
            1855-1986           JAXUCZ010000008.1  67335661-67335792   c
            1987-2098           JAXUCZ010000008.1  67335461-67335572   c
            2099-2247           JAXUCZ010000008.1  67334420-67334568   c
            2248-2349           JAXUCZ010000008.1  67333970-67334071   c
            2350-2436           JAXUCZ010000008.1  67333165-67333251   c
            2437-2550           JAXUCZ010000008.1  67332722-67332835   c
            2551-3031           JAXUCZ010000008.1  67331519-67331999   c
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..3031
                     /gene="Ccdc33"
                     /note="coiled-coil domain containing 33"
                     /db_xref="GeneID:315712"
                     /db_xref="RGD:1561126"
     exon            1..378
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     CDS             358..2685
                     /gene="Ccdc33"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 33"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 33 isoform
                     1"
                     /protein_id="NP_001014113.1"
                     /db_xref="GeneID:315712"
                     /db_xref="RGD:1561126"
                     /translation="MGRQKTKVPEEPQDRLDTSLDPYPDTNYLAPCNKETVMVTLYGA
                     TNLPTCKDSSEPWPYVVVKTTSEEANNHSPQARTSVTSEPTRAPIWGDTVNVEIQAED
                     TGREDVTLKVMDSNKKEELVSYEIPIKYLRAFHPYHFELKKNEKEDEATAKTRLYATV
                     VRKGSLLPRYIGYDHTALEVFLRGVNEPLVNNPSPMVVIARVVPSYTEFKARKARQDP
                     ASVGLPLTQVSFPISSPMTFDVPRVSQNGCPQLSKPGGPPEQPLWNQSFLFLGRDGAT
                     SFSEDTALVLEYYPSASMKSSEPWTLNQPLGVSVLPLKSHLYRKMLTGKGLKGLQVER
                     LPIFDTNLKTINGEAPSVNLAFQLLSSERPENFLTPNNSKTLPTLNPKILDENLGAIR
                     ESWSVSSLDSSQEAEELQPRDVEMNNYRRAMQKMAEDILALRKQANILEEENRMLRSH
                     LTQQSIEEEQNRAEEENLAVSMKQRLLLNELDMKRLRDRVQHLQNELIRKNDREKELL
                     LLYQAQQPQAAQLRRYQDKLQKMKGLEDTVRHQEKVIEKMEQILEERLHERKEPAPSN
                     RPQGKPIMDAFAPQASGIPLGPAGENLAMDLYSMLLAENTRLRTELEKNRQQSAPIIL
                     QQQALPVDPGELGAGGDLAERLQDTNGPGHSKYTETMPAQDFLGGTSDKFSLLAKLEQ
                     AQSRILSLENQLEESARHWAREKQNLAIRLQEQQHGFGQSPNSIIVDQPHFARSQGST
                     TPRQNLKDEGYPGNIERPLQTHLTPGTRDIRHHLR"
     exon            379..542
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            543..676
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            677..786
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            787..894
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            895..986
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1107
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1237
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1371
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1372..1443
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1444..1599
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1762
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1763..1854
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1855..1986
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            1987..2098
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            2099..2247
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            2248..2349
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..2436
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            2437..2550
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
     exon            2551..3031
                     /gene="Ccdc33"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtactttccc aagactgggc agagcaaggt tcaccccacg tgaccctcct gtggctgcca
       61 ggagtcagtt ccctaacccc ctgctcagct gatcatggcc taaatactcc aaggcacctc
      121 cacccacggg atctctcact tctgagaagg attcatattg tatccgccca ctcaacttcc
      181 cctacccagt ccagccccca aaagcagtgt gtggcacccc tgagaccaca ctgatgggta
      241 aagactcaag gtatctgggc atgctggctg tcgaggccca tgactgatcc cctgcccgta
      301 tccagtgcta atactaaccc caagattgct aagtgaacac ttcttgcccc caagaggatg
      361 ggacgacaga agacaaaggt tcctgaagaa ccacaggacc gcctggatac ctctctggac
      421 ccatatcctg acaccaacta cctggctccc tgtaataagg agactgtcat ggtcactctg
      481 tatggagcta ccaaccttcc tacctgcaag gatagctctg aaccgtggcc ctacgtggtg
      541 gtaaaaacca catcagaaga agccaacaat cacagccctc aagcaaggac ctctgtgacc
      601 tcagaaccca ccagagcccc catctggggg gacacagtga atgtggagat ccaggcagag
      661 gacacaggac gagaagatgt gaccctcaag gtgatggaca gcaataagaa ggaggagctg
      721 gtgtcctatg aaatccccat taaataccta cgcgccttcc acccatacca ctttgagtta
      781 aaaaagaatg agaaagaaga tgaagccact gccaagaccc gcctgtacgc cactgtggtt
      841 cggaagggca gcttactacc ccgctacatt ggctatgacc acacagctct ggaggtcttt
      901 cttcgaggag tcaatgagcc cttagtcaac aatcccagcc ccatggtggt aattgctcgg
      961 gtagttccca gctatactga gtttaaggcc aggaaggcca ggcaggaccc tgcctctgtg
     1021 gggctgcccc tcacccaggt ttctttccct atctcatcgc caatgacctt cgacgtgcct
     1081 cgggtcagcc agaacgggtg tcctcagttg tccaaacccg ggggaccccc ggagcagccc
     1141 ttgtggaacc agtccttcct cttcctaggc cgagatggag ccaccagttt ctcagaggac
     1201 acagccctgg tgctggagta ttacccctct gcctcaatga aaagcagcga accatggacc
     1261 ctcaaccagc ccctgggtgt ctccgtgtta ccactgaagt ctcatctata tcgcaagatg
     1321 ttgacaggaa aaggcttgaa agggctgcaa gtggagcgac tccccatctt tgacaccaac
     1381 ctaaaaacca tcaacggaga agccccctca gtgaatctag ccttccagct gctttcctcg
     1441 gagaggccag aaaacttctt gacaccaaac aacagcaaga ctctgcccac cctcaacccc
     1501 aagatcctag atgagaatct gggtgccatc cgtgagtcct ggtccgtgag ctccttagac
     1561 tcctctcagg aagcagagga gcttcagccc cgagatgtgg agatgaacaa ttaccggcgg
     1621 gccatgcaga agatggccga ggacatcctg gcactgagga agcaggccaa cattctggag
     1681 gaggagaacc gcatgctaag gagccacctg acccagcaga gcatagaaga agagcaaaac
     1741 agagctgaag aggagaacct ggcagtgtcc atgaagcaga ggcttctgct gaatgaactg
     1801 gatatgaaga ggctgcgaga cagggtgcag cacctgcaga atgagctgat tcggaagaat
     1861 gatagagaga aggagctgct gcttctctac caggctcagc agccacaggc tgcccagctg
     1921 aggcggtacc aggacaagct gcagaagatg aagggcctag aggacactgt gcggcaccag
     1981 gagaaggtga tcgagaagat ggagcagatt ttggaggaaa ggctccacga gaggaaggag
     2041 ccagcaccat caaacaggcc acaggggaag cctatcatgg atgcatttgc tccccaagcc
     2101 tctggcattc ccctgggccc tgcaggagag aacctggcta tggatcttta ttccatgctg
     2161 ctggcagaaa acacgaggct gaggacagag ttggaaaaga accgtcagca gtcagccccc
     2221 atcattctgc agcagcaggc cctcccggtg gatcccgggg agttgggagc aggtggagac
     2281 ttggcagaga ggctacaaga cacaaatggc ccaggccact ccaagtacac agagaccatg
     2341 ccagcacagg atttccttgg tggaacttca gacaagttta gcctcttggc caagctagaa
     2401 caggctcaga gtcggatttt gtccctggaa aaccagctgg aggagtcagc tcgccactgg
     2461 gcacgagaga agcaaaatct agccattcgg cttcaggagc aacaacacgg ctttggacag
     2521 tcaccaaact ccatcattgt agaccagcct cactttgctc gcagccaagg ctctaccacc
     2581 cctagacaga acctgaagga tgaggggtat ccagggaaca tagaacgacc tctgcaaact
     2641 catctaacac cagggaccag agatattagg catcaccttc ggtgataaaa taggctccag
     2701 tgttattcag aagtcacagc ctactgggtt ttggagtctc agaagcctga cttgccaggt
     2761 aagatgccct gaggtaatgt acccttggat cagggatgta ctcatctgtc ctgcttgtca
     2821 cagaatgctg gagcagccaa ggatcctcag ctgccctcca aaccagaagc ctccctgccc
     2881 agctcagatg caaagctcat cagaccctca aactcccaga ctgagggctc tcacccccag
     2941 aagacctgag actggagcag accccctcct ccatgtgctg gggactcacc cacccccaaa
     3001 gatgtcttta gtaaatgctg taagtcagta a
//
