LOCUS       XM_039111204            2676 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 30
            (Ccdc30), transcript variant X2, mRNA.
ACCESSION   XM_039111204
VERSION     XM_039111204.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2676
                     /gene="Ccdc30"
                     /note="coiled-coil domain containing 30; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362580"
                     /db_xref="RGD:1305604"
     CDS             377..2515
                     /gene="Ccdc30"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 30 isoform
                     X1"
                     /protein_id="XP_038967132.1"
                     /db_xref="GeneID:362580"
                     /db_xref="RGD:1305604"
                     /translation="MKDPETIKVQDFNEILKMGQENIKVLENDLSEEREKRQQLTSAF
                     TAIQKSLQVDSEEFQKSKSELLCLYKEIQSLPRAEGREQFLVAYNLLQRENSELEAKV
                     LKFSQELELLKHCSIGDKTANVMTSENVCEDLVSKGPLLEVKDVSPSEDRQALCSELG
                     ESKQEKMPEESVKAATLPREGQESQQMRGHDQPLAVEPKEVGRLEEEGSLQSQSCGDS
                     SDDCSTKYLTSGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHN
                     SLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQQKVKELELEGLRQTQSIKS
                     QQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEIKEAKST
                     EARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIER
                     RKCEEYVKSNQELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQK
                     VKDRLTLELEIRNKRIKELEDDTGKLQQKIEMEKVFQGQIMTQNDILLLEKRKLLEQV
                     TNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLEQIIRSIQIRREE
                     ETVITDNAAFEILKKILPLQNSSFSGTGLVLPAKNPKEETELLKSEGATVMAKSPEPP
                     SQSQDSENGYINVTSLKETYHTQGDRKPKL"
ORIGIN      
        1 agtggtagag cacttgccta ggaagcacaa ggcccttggt tcagtctcca gctccgaaaa
       61 aaagaaccaa aaaaaaaaaa aaaacaaaaa aaaaactgac tgtcaggctg tgcccaggac
      121 gcagagttga gttcagagcg ttccgtgagc cctgccttcc agacagaacc ctgacagtgc
      181 catgttctga gctgtttaac tgtttctcaa agtccttggc agctggccct tgtgaaggag
      241 gcaacctgca acaagtccat tggctttcct ctttgatcga tcaatcactg ctgactgaca
      301 ggtgacttcc gtggattgag atttccttag agcctgagtt atatcactaa cctaggaaga
      361 ctgaagagac accagaatga aagacccaga gacaattaaa gtgcaagatt ttaatgagat
      421 attgaaaatg ggccaagaaa atattaaagt attggagaat gacttgtcag aggagaggga
      481 gaagagacag caactgacgt cagctttcac tgctatccag aagtccttgc aagtggatag
      541 tgaggaattc caaaaatcaa agtcagaact cttgtgcctt tataaggaaa tccagagtct
      601 tccaagggct gagggcagag agcaattttt agtagcatat aacctgctac aaagagagaa
      661 ttctgaatta gaagccaagg tcttgaagtt ttcacaagaa ttggaactgt taaaacactg
      721 ctctataggg gacaaaactg ctaatgtgat gacaagtgaa aacgtctgtg aagacctggt
      781 gtccaaaggg ccacttttgg aagtgaagga tgtgagcccg agtgaggaca gacaggcact
      841 ctgttctgaa ttaggagaaa gtaaacagga gaaaatgcca gaggagtcag tgaaggcggc
      901 cactttgcca agagaggggc aggagtcaca gcagatgcga ggccacgatc agccattggc
      961 ggtggagccc aaggaagttg ggaggcttga agaagagggg agcctccagt ctcagagctg
     1021 tggtgatagt tcagatgact gcagcaccaa gtatctaaca tctggagaga aagcaagcta
     1081 ccagcatcaa ggggaactgc gggaactgcg gcagaacctg caccgcctgc agatcctgag
     1141 caactcggct gagaaggagc tgcggtacga gcggggccgg agcctagact tgaaacaaca
     1201 caacagtttg ctccaggagg agaacctcaa gatcaaaatt gaactcaagc aggcccagga
     1261 gaagttgctg gacaacgcca ggatgcactc ctccctcatg gcagagtgga agctctgtca
     1321 gcagaaagtc aaggagctgg agttagaagg acttaggcag acgcagagca ttaagtccca
     1381 gcagggccta caggaaaagc tggctcggga gaaatcgaaa acagcggaag cacaggaaaa
     1441 gattttggac ctgcagcaga aactagacca cgctcgacaa gtctgccttt cagatgtttg
     1501 cattttgcgg aggaagcagc tagaggaaga gatcaaggaa gcaaagagca cagaggccag
     1561 gcttaagcag cagtgccagg aggagcagca gaggaggatt cttctagacc aggatgtaaa
     1621 tgagctccag agacaagtga gaaccttgca ggataaggag agccaacagg aagcagccaa
     1681 ttcccagcaa caagagactc tacgcaaaca actggaaatc gagagaagaa agtgtgaaga
     1741 gtatgtcaag agcaaccagg aattgtcaga gaaactcgct agcttgcagc aagaaaagga
     1801 agctctatgg catgaacacg ggcagttttt ggagcaactg ggcgatcacg tgagaaacta
     1861 caaagacaaa caccactgcc acaaagccaa gctccaaaag gtcaaggacc gtctgactct
     1921 cgagttagag atacggaata agaggattaa agaacttgaa gatgacactg ggaaactgca
     1981 acagaaaatt gaaatggaga aagtgttcca gggccagatc atgacccaaa atgacatcct
     2041 cctcctggaa aagaggaagc ttctagaaca agtcaccaac caagaagaac tgatttgcag
     2101 caacaagtcc acaatatctg cattccagag caagacattt ttactggata aagaaaacca
     2161 gcagttgcag gagaactgcc tccggctaat gcagcaaatt agcctcttgg agcaaattat
     2221 aagaagcatc cagatccgca gagaagagga aacagtaatt actgacaacg ctgcatttga
     2281 aatactcaaa aagatactac cgttacaaaa ctccagtttc tcagggacag gtttggtatt
     2341 gccagctaag aatcccaagg aggagactga gctgcttaag tcggagggag caacagtaat
     2401 ggccaagtcg cctgagcctc cttcacagtc acaggattca gaaaatggat acatcaatgt
     2461 gacttctcta aaggagacat accacacaca aggggaccgg aagccaaaac tatgacctca
     2521 cgggatctga aacaatacta atcatgccta ctaagtcaga gcctgggtac agaggtgcaa
     2581 actgagctgg agacgtctca cagaacaccc tggacatcaa caaggagtct tcaaaatcgc
     2641 tttttaaaca gtcattaaaa tttttcaaaa atggaa
//
