LOCUS       NM_001134689             820 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus coiled coil domain containing 28B (Ccdc28b),
            mRNA.
ACCESSION   NM_001134689 XM_001061538
VERSION     NM_001134689.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Cardenas-Rodriguez,M., Osborn,D.P., Irigoin,F., Grana,M.,
            Romero,H., Beales,P.L. and Badano,J.L.
  TITLE     Characterization of CCDC28B reveals its role in ciliogenesis and
            provides insight to understand its modifier effect on Bardet-Biedl
            syndrome
  JOURNAL   Hum Genet 132 (1), 91-105 (2013)
   PUBMED   23015189
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Badano,J.L., Leitch,C.C., Ansley,S.J., May-Simera,H., Lawson,S.,
            Lewis,R.A., Beales,P.L., Dietz,H.C., Fisher,S. and Katsanis,N.
  TITLE     Dissection of epistasis in oligogenic Bardet-Biedl syndrome
  JOURNAL   Nature 439 (7074), 326-330 (2006)
   PUBMED   16327777
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB711403.1 and BC168155.1.
            
            On Sep 5, 2008 this sequence version replaced XM_001061538.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM088098.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840109 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-237               CB711403.1         11-247
            238-820             BC168155.1         615-1197
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..820
                     /gene="Ccdc28b"
                     /note="coiled coil domain containing 28B"
                     /db_xref="GeneID:682445"
                     /db_xref="RGD:1583447"
     exon            1..53
                     /gene="Ccdc28b"
                     /inference="alignment:Splign:2.1.0"
     exon            54..239
                     /gene="Ccdc28b"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..678
                     /gene="Ccdc28b"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 28B"
                     /protein_id="NP_001128161.1"
                     /db_xref="GeneID:682445"
                     /db_xref="RGD:1583447"
                     /translation="MEDKKKKRSPKPCLTQPAQAPGTLRRVPVPTSHSGSLALGLPHL
                     LSPKQRAKFKRVGKEKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDF
                     HSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDEEEEEDGVTEGLPEEQ
                     KKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEEQPAA"
     exon            240..406
                     /gene="Ccdc28b"
                     /inference="alignment:Splign:2.1.0"
     exon            407..600
                     /gene="Ccdc28b"
                     /inference="alignment:Splign:2.1.0"
     exon            601..623
                     /gene="Ccdc28b"
                     /inference="alignment:Splign:2.1.0"
     exon            624..800
                     /gene="Ccdc28b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaaggagat tgcaaagaag cactgttcta cactccagac cccagacctc cagacctgag
       61 gtccgacaac acccaatgga agacaaaaag aagaaacgga gtcctaagcc ctgtctgacc
      121 caaccagccc aggccccagg cacactgcgc agagtccctg tgcccaccag ccatagtggc
      181 tccttggccc tgggactccc tcatttgctg tcacccaagc agcgagccaa gttcaagaga
      241 gtaggcaagg agaaatgccg ccccgtgctg gctggaggtg gaggcggctc tgcgggcaca
      301 cccttgcaac actccttcct gactgaagtg acagacgtct atgagatgga gggagggcta
      361 ctgaacttgc tcaatgattt ccattcaggc cgcctgcagg cctttgggaa agaatgttcc
      421 ttcgagcagc tggagcacgt tcgggagatg caggagaagt tggccagact gcacttcagc
      481 ctagatgtgt gtggggaaga agaggatgag gaagaggaag aggatggggt cacagaaggc
      541 ttgcctgagg agcagaagaa gacaatggct gaccgcaacc tggaccagct gcttagcaat
      601 ctggaagatc ttagcaattc catacagaag ctgcacttgg cagagaatgc tgagcctgag
      661 gagcagccag ccgcataggt gctgcctgga ctcttctgct tctctcttct cttcaaactg
      721 tgacttttta cggattcggg agctccctag gtgctatgag gtcgggggca ctggttggaa
      781 ttaaacaaac ggaaaagcta aaaaaaaaaa aaaaaaaaaa
//
