LOCUS       XM_006247468             965 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 200
            (Ccdc200), transcript variant X1, mRNA.
ACCESSION   XM_006247468
VERSION     XM_006247468.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006247468.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006247468.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..965
                     /gene="Ccdc200"
                     /note="coiled-coil domain containing 200; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102555975"
                     /db_xref="RGD:7612562"
     CDS             109..723
                     /gene="Ccdc200"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 200
                     isoform X1"
                     /protein_id="XP_006247530.1"
                     /db_xref="GeneID:102555975"
                     /db_xref="RGD:7612562"
                     /translation="MGSAYHWEARRRQMALDRRKALMAQQQEQEAKKQEEKKQHSEKT
                     SQPHQDSKGPQQDAKGTQQDAKGTQQDAKGTQQDAKGTQQDAKGTQQDAKGTQQDAKC
                     PPPTQPQQQAKPQEQAQAQPPGPKSQKEHDPPTQSTFKDSLQKDTQKQGPQTRLSGAQ
                     QDGQQACKVCDKPPVLPGPGLTNVCQPASSKYSRLTSTNYIQQW"
ORIGIN      
        1 aggcaacaga agcatttggg tgcagtggcc tcgttttggg cttttcctgc tctcaccccc
       61 tgctgggatt ttcttttttt tttttttttt tttttttact acaccatcat gggtagtgcc
      121 taccactggg aggctcggcg tcggcagatg gcattggacc ggaggaaggc gttaatggca
      181 cagcagcaag agcaggaagc aaaaaaacag gaagagaaga aacagcattc tgagaaaaca
      241 tctcagccac atcaggattc aaaagggcca cagcaggatg caaaggggac acagcaggat
      301 gcaaagggga cacagcagga tgcaaagggg acacagcagg atgcaaaggg gacacagcag
      361 gatgcaaagg ggacacagca ggatgcaaag gggacacagc aggatgcaaa atgcccacca
      421 cctacacagc cacagcagca ggcaaagcca caggagcagg cacaagcaca gccacctggg
      481 ccaaagtcac aaaaggagca cgaccctcct acacagagca ccttcaagga cagcctccag
      541 aaggacaccc aaaagcaagg accccagact agactctcgg gagctcaaca agacggccag
      601 caagcctgta aagtgtgtga taaaccccca gtccttccag gccctggtct cacgaatgtt
      661 tgccagcctg cctcttctaa atattcccga ctcacgtcaa ctaattacat ccagcagtgg
      721 tgatccagag atggactcca agacctgatg ataccacaaa gcaaaagcaa aacccaaaaa
      781 aacaatcaac cgaaccacaa aacaaaaaac aaaacaaaaa aaaaaaaaca aaaaacaaaa
      841 aacccaacaa caacagaaag acagcaacca cactctcttt ccacccagca atctttctaa
      901 tccaaaaagc catttgcgtt tggaaaggag actagctggg attaaaatgt gattcctgga
      961 gagaa
//
