LOCUS       XM_039093822            1233 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 198
            (Ccdc198), transcript variant X4, mRNA.
ACCESSION   XM_039093822
VERSION     XM_039093822.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427732.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1233
                     /gene="Ccdc198"
                     /note="coiled-coil domain containing 198; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     16 samples with support for all annotated introns"
                     /db_xref="GeneID:102556129"
                     /db_xref="RGD:7568824"
     CDS             141..1031
                     /gene="Ccdc198"
                     /codon_start=1
                     /product="uncharacterized protein CCDC198 isoform X1"
                     /protein_id="XP_038949750.1"
                     /db_xref="GeneID:102556129"
                     /db_xref="RGD:7568824"
                     /translation="MGLGHSKTHPQVIKVTPLQSQEAKTPSTCPVFFALNRNLEEKSS
                     YSFTRLQEQNRTLEQLPPLRETWYGRLPAVSRAVYLDIPLKHEETSIIKRHPPRRIQK
                     LEPIDLPQAITSERLLCQQKASTKPSPKQENEKIQLPLYTSGKRQYLHKMKMLEINHK
                     RQEAQMELRRSLLSKAMRDMQKLKDHDGNKITQSKARSNGYEVLIIPPDENIYRDPDL
                     ENAQDEEFLDYLTEDDYFVRNTGKVETWLRAQEAQGRFFWNSSSSDSGELEKEERRPQ
                     ALVRTKTEKIPLYDDFYDSA"
ORIGIN      
        1 attctttagt tctggaatgg caaagtagaa gttgaaggga agtctccatg gaaaccaacc
       61 tcccaggaag tggccagaga agttagtgtc aggggtacag aacagggagg atgtcatgaa
      121 ggaaacacct gctttggaac atgggcctgg gccactccaa gactcaccct caggtgatca
      181 aagtcacacc tttacaaagc caagaagcga agacaccctc aacttgcccc gtgttctttg
      241 cattgaatcg gaacctggaa gaaaaaagtt catactcatt cacgagactg caggagcaaa
      301 atcgaactct ggaacagcta ccacctctta gagaaacctg gtatggaaga ctccctgcag
      361 tatccagggc cgtgtatcta gacatcccac tgaaacatga agaaacgagt attatcaaaa
      421 ggcatccacc ccgaagaatt caaaagcttg aacccattga cctgccacaa gcaattacct
      481 ctgaaaggct tctgtgccag caaaaagcca gtacaaagcc cagtccaaag caggaaaatg
      541 agaaaattca acttcccctg tacacttctg ggaaaagaca gtatttacat aagatgaaaa
      601 tgctggagat aaaccataaa agacaagagg cccagatgga gttgaggagg agtcttctga
      661 gtaaagcgat gcgtgatatg caaaagctga aggatcacga tggcaataaa atcacccaga
      721 gcaaggcaag gagcaacggc tatgaggttc tcatcatacc gcctgatgaa aacatataca
      781 gagacccaga cctagaaaat gcccaggatg aagaattctt ggactatctc acagaggatg
      841 actattttgt ccggaacact ggcaaagtgg aaacatggct ccgagcacaa gaagcccagg
      901 ggcggttttt ctggaacagt tccagctctg actctggtga gctcgagaaa gaggagagga
      961 gaccacaagc actggtgagg accaagacag agaagatccc tctttatgat gacttttacg
     1021 acagtgcata acaaagctac cccagggagt gagggcacgg aatgccttca gcttgttctc
     1081 ttctataaaa ccattcatat ttgcatatgg attactctga gggatgtgag gtatttggga
     1141 atgcagagaa gatatcatcc agagtcttgt ggtttaatag ccttgccatg tatgctatac
     1201 tctacgcctt aaaactgagg ggttgaaaca aaa
//
