LOCUS       XM_039088984            1353 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 188
            (Ccdc188), mRNA.
ACCESSION   XM_039088984
VERSION     XM_039088984.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088984.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1353
                     /gene="Ccdc188"
                     /note="coiled-coil domain containing 188; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 89% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:498115"
                     /db_xref="RGD:1563782"
     CDS             1..1212
                     /gene="Ccdc188"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 188"
                     /protein_id="XP_038944912.1"
                     /db_xref="GeneID:498115"
                     /db_xref="RGD:1563782"
                     /translation="MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLV
                     PLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVE
                     VEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLES
                     AQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWSPESART
                     RLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHM
                     ALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEKGRPQLGCS
                     EGLKGHLWLLALRLLLGALLACTAAYVYVVDPTPFEGLVPPLLSRANVWKLRALLGPF
                     LRLEVDDFLPF"
ORIGIN      
        1 atggaggggc cagaacccct gggaccctgt ggacactctc acacccagca tcccccagcc
       61 ccagtttcaa acaaccatgg aggatgcctg aatcagccct gtcagggatt tgtaaggtgg
      121 ccctgtctgg tcccccttca gtccactcag tcattagagt cttccagacc tttcccagct
      181 ccagggacag ggagcggggg acccagaatg agaggagaag cccctgggat gtttctgtca
      241 agtgaaggag agattccacg acagagagct cgagagccag caggcgccag acaagaagag
      301 gttgaggtag agtgggactg gcccctacat ccagggcatg agcaggggcc acccaggcag
      361 acagcacccc ccacctcagg acccaggccc tgcccatgcc caaccctgcc tcccagagga
      421 agggccacgg cttcatccag acaagctccc acacagcttc agggcgggac actagagtct
      481 gcacagcaat cctttctgca gctggagcag gagaaccaca gtctgaaaag gcagaaccag
      541 gaccttcggg agcagctggg ggccctcctg gggccagggc agcagttcct gcctctatgt
      601 tctgagcact caagctgtac agcgctggcc tggtcccccg agtcagccag gacacggctc
      661 ctggaagaca gggcacctgt gcagctgtta aggcagcagg agctctgccc agggaaagag
      721 tcttttgtgc ggcagtccca gagtgagctg caacagatcc gattgtcctt tgagaggaag
      781 aagatggcca ttactgaggt gtgggacggt gtggccgagg tacacatggc tctgaacaac
      841 caggccaccg ggctcctgaa cctcaagaag gacatccgag gtgtactaga acagatggag
      901 gacattcagc tggagattct gggggagagg gcccagtgcc gcactcaggc caggaagcag
      961 cagcaaatga tggagaaagg caggccacag ctgggatgtt cggagggcct aaagggccac
     1021 ctctggctgc tggccttgag gctgctgctg ggtgctctgc tggcctgcac agcggcctac
     1081 gtgtacgtgg tggaccccac acccttcgag gggctggtgc cacccctgct gagccgagcc
     1141 aacgtctgga agctcagggc cttactgggt cccttcttac gcctggaggt ggacgacttc
     1201 ctgcctttct agaacagaag cccagtggcc ccagcaagga ggccaggtgg ctggtgctac
     1261 cccaggggct caggggcctt actggtcctt gcctacagca ctgtggcaca tggcccctac
     1321 cagaagctgc agagaagggt ggaggaaggg cta
//
