LOCUS       XM_017593913            5552 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 180
            (Ccdc180), transcript variant X2, mRNA.
ACCESSION   XM_017593913
VERSION     XM_017593913.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017593913.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017593913.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5552
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5552
                     /gene="Ccdc180"
                     /note="coiled-coil domain containing 180; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 2 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 20 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100910460"
                     /db_xref="RGD:6498132"
     CDS             518..5530
                     /gene="Ccdc180"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 180"
                     /protein_id="XP_017449402.2"
                     /db_xref="GeneID:100910460"
                     /db_xref="RGD:6498132"
                     /translation="MSPVGKMSQVQNGKVYQQIFHAQVQLVQSLAATRKRAAEHSETP
                     KNVKTPMMKKVPLPEGETMTPRQRKWVHSLPNDGVTENPVLYREKEEARKEMERLTED
                     MIASQEVQGLMDIIVPEKVSNLQEYEDHKKRKYLRALASFQEELEQIGVELEPLILEK
                     GKLLLKKISKSDEDVDKLFKNVEIEPDLDSYTIETLLELWEKVAERFMQQKQEIKELD
                     EELLALEFSRADKLKEVLKKYVGIIEKTAYILQPDVYRLIDKEAMAMNQALLGNRRAI
                     AQLLVNLTEATLQQELDNRHRWQSLVDTWKALKKEGLIQRFTEFMASEEIQEPPEVKK
                     ELEEMQKNQEVLQKVRLDHLCTICNLLPPNYNKNQLTEWYNSLTSLNKQLDTYHMDSM
                     SLVHFLYEKVWQQCLSRVQECKQQLLEWKAFSEAEAESLVNPTFFLMVGEFQSKVEKQ
                     LELLDSSFEILAKDTELKSSDLFRYFQEAVKLWEGHQSVLLTQELELEKRIEQHRQKH
                     NQETQNQETSLDKLLDQLRQQSQEESLKIHMDKARTFLKNMKSRYECFHILLTKEVME
                     YPGLVLKELNCYSFTLSRHFFIREIFEQNLAGEVIFKFRQPESHERHFMRKIRKLKKK
                     QRERMGAHKGEESVAPKKSAEDMKEEGSEGSEPSLTEGGPSQEAEEIQGLRETSSEAS
                     QDLENLRAPEEREEIGEEEEEEEREDEEIKEEREEEEVKEEREKEEAKEEREEEEAKE
                     EREEEEAKEEREEEEAKEEREEEEEGEEEEEEEEETIREDEEDEDGMNEDELEYYQET
                     YPMGQEEEVMEEISCEEMEFFTTASGNTYFAFLSVEDEQQIHSRPHSQHTVFFHDSFS
                     NKYIEKVAVPDKLILKIKKRIRAGFFEHLEKWFDQSALNARIVVATKVDELNSELELR
                     LHLHKPRLKQVEKDIHNVRAAELLLHQERLDSHCAGVIETLKKERLMFCQFQEEQAVR
                     SKNFRRKIYDMEHIFLNATKSQKLAHLTNTLHRELLSYVDVIQVSLRSFRQYLEESLG
                     KLRYTNIDFVKHCRLFSEGGNFSPEEVETLCHRLEKEATRIEFVESLIMIHMEKMETE
                     YLDQANDVINKFESKFHNLSSDLIFVEKIQRLMTNLQVNIKCQVAKSNSQAEGLNSSL
                     EQLQQKIQTCQGHRGDKDNVTTDDLLAFVRSWKEKLSQRIKYLNCSLDVVSITQEVFT
                     DTILTDAEMESEIQMSSEALEEEAKVGLVTPESFAQPTRMGRPMIEDPAVDVVRRILQ
                     ISQAKSTCPCDKERSQTVLKRHRYRGDKTLKKALASSSVTSAGSMTRHSKYIRIDRKF
                     QVLGEKPSSQVEDFKGIILNLLWESNEHLLVVVEDFYRKEKHPITRPECMYENFDQCA
                     DHIGRKILEYHHQADEYHNSCLLELRAQVRRFEELLPQVCWLVTENYKEQHWSKFHAS
                     MKEVQEQFEQQQKQLEKEKEENAQKLHPNLGHPTYSSQMESLRIREELRQQKVDQMIY
                     MNQEKMEETAKKYARFFIANLASFTERFLIQLDEVITIDDIQVPRMEPPKQKVSILIR
                     RKLAMLSLEEESEKPLIERGSRKWPGIKPNEITIQSKILIRRTPSITTLKTTLGHLAA
                     VEARDAVYLKYLALFDKEMKSIQDRFRTLLLESRRWKESWKRSLSTIQTLYLTRPPLY
                     FK"
ORIGIN      
        1 ggagcctcca ggcttgggtc aggtcctcca aatcgctggg cttgggggac agcgggctga
       61 ttgagcagac aggaaggtgg gcgtgtcgca aacagtcggc atctaattag cgaggccaga
      121 atcaaacttt tccttccctt tgcagcactc cccgatttct cctggaggat gtggctgggg
      181 ttccagtcct acctaacgtc ttaggcggat tgaccatccc cagaagagct caagtcgagc
      241 acagacaata atcctgccct ttccagaaag tgtctgtggg atttacgccc tgtgcgctag
      301 agaaaaccca ctgtgtctcc tcaccttccc ccacccgctc cacgcacacc ttatattgtt
      361 tgaaatctaa gtttctcctt aaacaaggtg tcctgtggga tctagtgctg tctttaggct
      421 ggaggtccta gcaagagggt cccagcctct gggtggaaac taagaccaag ttccaagtgt
      481 gtttccagaa ccaaggggaa ttgggtcaac agccaagatg tcgccagtgg gaaagatgtc
      541 acaagtacag aatggcaaag tctaccagca gatcttccac gcccaggtgc agctggttca
      601 gtccctggca gccaccagga agcgggctgc agagcattct gagactccaa agaacgtcaa
      661 gacacccatg atgaagaagg tgccgctacc tgagggggag actatgaccc ctcggcagag
      721 gaagtgggtg catagcctcc ccaacgacgg ggtcacggaa aacccagttc tctataggga
      781 aaaggaagaa gccaggaagg agatggagcg tctgacagag gacatgattg cttcccaaga
      841 ggtgcagggc ctcatggaca tcatagttcc cgagaaggtg agcaacctcc aagagtatga
      901 agaccacaag aagaggaagt acctgagggc gctggcgagc tttcaggaag agttggagca
      961 gattggggtg gagttggaac ctctcatcct ggagaaaggg aaacttcttc tgaaaaagat
     1021 ctcaaagtct gatgaggacg ttgacaagct cttcaagaac gtcgagatcg aaccagacct
     1081 cgatagctac actatcgaaa ccctgttgga actgtgggaa aaggtggctg aaagattcat
     1141 gcagcagaag caggagatta aggagctgga tgaagagctg ttggccctgg agttttctcg
     1201 agctgacaag ctaaaggaag tgctgaagaa atatgtcggc atcatagaga aaaccgccta
     1261 catcctgcag cccgacgtat ataggctgat agataaagaa gccatggcca tgaaccaggc
     1321 tctcctgggc aaccggaggg ccatcgctca gctgttagtc aacctgactg aggccaccct
     1381 acagcaggaa cttgacaacc gccaccgctg gcagagcctg gtggacacct ggaaggccct
     1441 caagaaggag ggcctgatac agcgcttcac tgagttcatg gctagcgagg agatccagga
     1501 acccccagaa gtgaagaagg aactagaaga aatgcagaag aaccaggagg tccttcaaaa
     1561 agtgaggctt gaccacctct gcaccatctg taacctcctg ccccctaact ataacaaaaa
     1621 ccagctgact gagtggtata actctctcac ttccctcaac aagcagcttg acacctacca
     1681 catggacagc atgtcactgg tacacttcct gtatgagaaa gtttggcagc agtgtctgtc
     1741 ccgtgtgcag gaatgcaagc agcagctgtt ggagtggaaa gccttttctg aagcagaggc
     1801 agagagccta gtgaacccaa ccttcttcct gatggtgggg gagttccaga gcaaggtgga
     1861 gaagcagctg gagctcctgg atagctcctt tgagattttg gccaaggaca cggaattgaa
     1921 gagctcggac ctcttcaggt acttccaaga ggcagtgaag ctgtgggagg ggcaccagag
     1981 tgtcctgttg acccaagagc tggagctgga gaagaggata gagcagcatc gacagaagca
     2041 caaccaggag acccagaacc aagagacttc ccttgataag cttctagacc aactgagaca
     2101 gcaaagccaa gaagagtcac tgaagataca catggataag gccaggacat ttctgaagaa
     2161 catgaagtcc aggtatgaat gttttcatat cctgctgacc aaagaagtga tggagtaccc
     2221 agggttagtg ctgaaagaac tcaactgtta cagcttcacc ctcagccgac acttcttcat
     2281 tcgtgaaatc tttgagcaga acttggctgg ggaagtgatt tttaaattca ggcaaccaga
     2341 atcccacgag agacacttca tgcggaagat aaggaaactg aagaaaaaac aaagggagag
     2401 aatgggagca cacaaaggtg aagaaagcgt agctcccaag aagtcagcag aggacatgaa
     2461 agaagaggga agcgaaggat ccgaacccag cctgactgaa ggggggcctt cccaagaagc
     2521 tgaggaaata cagggcctga gagagacctc ctcggaggca tctcaggacc tagaaaatct
     2581 gagggctcca gaagagaggg aagagatagg ggaagaagag gaggaagagg agagagaaga
     2641 cgaagaaata aaagaggaga gggaagagga ggaagtaaaa gaggagaggg aaaaggaaga
     2701 agcaaaagag gagagagaag aggaggaagc aaaagaggag agagaagagg aggaagcaaa
     2761 agaggagagg gaagaggagg aagcaaaaga ggagagggaa gaggaggaag agggagagga
     2821 agaagaggag gaggaggagg agacaataag agaggatgag gaggatgaag acggtatgaa
     2881 tgaagacgag ctggagtact atcaggaaac ctatcctatg ggtcaggagg aagaggtcat
     2941 ggaggagatt tcctgtgaag aaatggagtt cttcacaact gcaagcggga acacgtactt
     3001 tgccttcctg tctgtggaag atgagcaaca aatacacagt aggccccatt cccagcacac
     3061 cgtgttcttc catgactctt tcagcaacaa gtacatagag aaagtggctg ttcctgacaa
     3121 actaatccta aagattaaga aacggattcg agctggcttc tttgaacatc ttgagaaatg
     3181 gttcgaccaa agtgccctca acgctcggat cgttgtggct accaaggtcg acgagctgaa
     3241 ttcggagctg gagcttcggc tgcacctgca caagccaaga ctcaagcaag tggagaagga
     3301 tattcacaat gtcagagcag ccgagctcct acttcaccag gagaggctag acagccactg
     3361 tgccggtgtg atcgagacgt tgaagaagga gaggctcatg ttctgtcagt tccaagaaga
     3421 gcaagccgta cggagcaaaa actttcgccg caagatctac gacatggagc acattttctt
     3481 gaacgccact aaaagccaaa agctggctca tctcaccaat acactacacc gggagctgct
     3541 cagctacgtg gacgtcatcc aggtatccct gcgaagcttc cggcaatacc tagaagagag
     3601 tctgggcaaa ctccgctaca ccaacattga ctttgtcaaa cactgcagat tgttttcaga
     3661 gggcggcaac ttttcccctg aagaagttga gacgctgtgc caccgactgg agaaggaggc
     3721 tacccggatt gagttcgtcg aaagtttgat catgatccac atggaaaaaa tggagacaga
     3781 gtacctggac caggccaatg atgtcatcaa caaattcgag agtaaattcc ataacctatc
     3841 ttcggacctt attttcgtag agaaaatcca gaggctgatg accaatcttc aagtgaatat
     3901 caagtgtcag gtggcgaagt ccaactccca ggcggaaggg ttaaactctt ctctggaaca
     3961 gcttcaacag aagatacaaa cgtgtcaggg ccaccgggga gacaaggaca acgtgaccac
     4021 agatgatctc cttgcctttg tccgatcctg gaaagaaaaa ctgagccaga ggattaagta
     4081 cctcaactgc agcctggacg tggtgtccat cactcaggag gtctttacgg acaccatcct
     4141 gactgatgct gagatggaga gcgagatcca aatgtcttca gaggccctcg aggaggaagc
     4201 caaggtgggc cttgtcaccc ccgagtcctt cgcccagcca acccgcatgg ggaggcccat
     4261 gattgaagac cctgctgtag acgtggtcag aaggatcctt caaatttctc aggcaaaatc
     4321 gacatgcccc tgtgacaagg aacgctccca aacagtcttg aagagacatc ggtaccgggg
     4381 agataagact ttaaagaagg ccttggccag ctccagtgtt acctcagcgg ggagcatgac
     4441 gcggcattcc aagtacatca gaatcgacag aaagttccag gtgctcgggg aaaagccttc
     4501 ttctcaggtt gaggacttca aaggcatcat cctgaatctc ctatgggaga gcaacgagca
     4561 cctgttggtt gtagtggagg atttttatcg taaagagaaa cacccgatca ccaggcctga
     4621 atgcatgtat gaaaacttcg accagtgcgc tgaccacatt ggcaggaaga tcctagaata
     4681 tcaccaccag gcagacgaat accacaactc ctgccttctg gaattacgtg cccaggtgag
     4741 gaggtttgag gagctgctgc cccaggtgtg ttggcttgtg acagagaact acaaggaaca
     4801 gcactggagc aagtttcatg catccatgaa ggaggtccag gagcagtttg agcagcagca
     4861 gaagcagcta gagaaggaga aggaagaaaa cgctcagaag ctccatccga atcttggcca
     4921 ccccacatac agcagtcaaa tggagtcgct acgaatcagg gaggagctga ggcagcagaa
     4981 ggtggaccag atgatctaca tgaaccagga gaagatggag gaaactgcca agaagtatgc
     5041 ccgcttcttc atagcgaatt tggcctcctt cacagagagg ttcctgatac agttggatga
     5101 agtgatcacc attgatgaca tccaggttcc acgaatggag cccccaaagc agaaagtatc
     5161 catcctcata cgcaggaagc tggccatgct ctctctggag gaagagagcg agaagcccct
     5221 gattgaacgt gggagcagga agtggccagg aatcaagcct aacgaaatca ccattcaaag
     5281 caagatactg attcggagga cgccatcaat aactactctt aagaccaccc tgggccactt
     5341 ggccgcagta gaagcccgag acgctgtcta cctgaaatac ctggcactgt ttgacaaaga
     5401 aatgaagagt atccaggatc gtttcaggac cctgctgttg gagtctcgtc gctggaagga
     5461 aagctggaaa cgctccctta gcaccatcca gaccctgtac ttgacccgtc ctcctctgta
     5521 cttcaaataa agtctttatt tttctccctg cc
//
