LOCUS       XM_017601075            4080 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 178
            (Ccdc178), mRNA.
ACCESSION   XM_017601075
VERSION     XM_017601075.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017601075.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017601075.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4080
                     /gene="Ccdc178"
                     /note="coiled-coil domain containing 178; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:307556"
                     /db_xref="RGD:1308160"
     CDS             794..3394
                     /gene="Ccdc178"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 178"
                     /protein_id="XP_017456564.1"
                     /db_xref="GeneID:307556"
                     /db_xref="RGD:1308160"
                     /translation="MPENEKNAAQPSTNEDTSKTGRTCLQIKELKDKARALMIAEHAR
                     MQGLSEFFFSKHDDKTLYETKSTNTEEVNKGIYFSYPSRRHSCSLVNFPKPCVSKMIA
                     HIEDVECKIQEHLKQFEASFEEWTSATKDKKEDLDISASAQKIPPGKAKDVKCPELKK
                     RMETLLSEAIHLVKSLETDRAEAEQALRQQKSRKNRISMKIDSWSIWKLQELPVAVQK
                     EHEAFSKEIAELRNHLKDLRNTADQLQEQTDMLEQANSKVQADIDYMISHSVLLEKKR
                     KQELELLRKRYQKKFEVMEQFRALHEELKDSVDQIENAKIRLKRMKEEDERELLKDLT
                     TAASYDKELDKLSNLDDHYTTSIESVNQDIEEDEEVVSEVLRETQSTSNELANLMRMI
                     EDLKRQFDQYCWIQRKYEQEYTEALNNYYSAKNTWDIELSNITKDFNNISTVYVETLE
                     ENKRLKYEIDNITEEIGESIRKRAELEDEIHSFREMKTRNNNYLKHLYKQSYHVGAVY
                     HIARHKTDELEDKLAEVRRKFKVREDFLKRLIRSHIATGIEVQKRLYSVEESQFAEMQ
                     EYIRRKVLYNAALLEVQEPLKEFEREAERIRNIHREHAKMVHDIRRRKERVKRKVEAT
                     KKKLQKKSKKSLKELTKTEGKGTMIHQEIEIAKTKTFVFHEKSKELSKEIMIMDLERK
                     SFEEKLVKLQEEFMKLRFDREHIHGVFDHILRERQRCEERIFDEERRFKRLTEMRKDT
                     LENILERQSDLLDENLRLAKEYQNTQMLFLKEKEAYFNGYDRLLSLNSSVSDKKKLCQ
                     LQRKLGQKWQEYFRLLILFNQSKLAKFQGDSQNSIQKIFVVQEESSSLIQHILDFFQT
                     LPTSPCEEDD"
ORIGIN      
        1 aatgcacgag ttaatgaatt aatgaattca acttcctttt ctctccaaca gttagctaac
       61 agtataaagt tatcttaaat atcaactaca ctgcaccggg agctcatatt ttacagtcag
      121 tcttctggtc acagtgtctt agggaaaaga gacccagtgc tgagagttcc tcggtgaagg
      181 agtgatcaca aaacaaaata caggctagca agtctcggag aggacaggac caaggtccca
      241 aagtcttctt agatgctcaa tgtggtcttc cagctgtcta tcctatgata tcttactatg
      301 ggaagagccc ttgtttcatc cccatttgtt aacccatgaa ggggaaagga gttctgtcaa
      361 gcaagttaaa gaggaaataa acaaggagca gctcatcaca caaggcccgc caatccaggg
      421 tctgaggcag cagagaaaaa gtctctggat gggttgggag aggagggttg ggaaaggcag
      481 agagaatggg aaggagagac agcccagaaa ggtggagaga gaggcccagc ggagtaggga
      541 gactggactg cctgggaggc tcgagccagt aacggacgga cgccacagca gagaagcgaa
      601 agctggcgta gaggctctca gtatggtgtg aaaatacaga gaaaagagaa gttctaccaa
      661 gaactgtgaa ggatgaaaga tttccaactt tctggcaggc caacaagctg tctgatttga
      721 atgaagaaag cctgaggatt ccaggcagga gacttttgaa aaattgtcag gttttagaat
      781 actgtcaaaa atcatgccag aaaacgagaa aaatgcagct caacctagca ccaatgagga
      841 tacatcaaag acaggtagaa catgtcttca aataaaggag ctcaaagaca aagcaagggc
      901 attaatgatt gcagaacatg ccagaatgca aggcttgtca gaattcttct tctccaagca
      961 tgacgataaa acactttacg aaactaaatc aacaaataca gaagaggtga ataaaggcat
     1021 ctacttcagc tacccaagtc gacgacatag ctgttctttg gtaaatttcc ctaaaccatg
     1081 tgtcagcaaa atgattgccc acattgaaga tgtggaatgt aaaatacagg agcacttgaa
     1141 acaatttgaa gcttcctttg aagaatggac ttcagccaca aaagataaaa aggaagactt
     1201 ggatatctct gcttcagcgc aaaaaatccc cccaggaaaa gcgaaagatg tgaagtgtcc
     1261 tgaattgaag aagaggatgg agacattact atcagaggcc atccacctcg ttaaaagtct
     1321 ggaaactgac agagcagaag cagaacaagc tttaagacaa caaaagtcaa gaaagaatag
     1381 gattagcatg aaaattgact cttggtccat ctggaagctc caagaactcc cagtagctgt
     1441 tcagaaagaa catgaagcct tctccaaaga aattgcagag ctgcgcaacc atcttaaaga
     1501 tttgaggaac acggcggatc aactgcagga gcagacggac atgttggaac aagccaattc
     1561 aaaggtccag gcggacatag actacatgat ttctcatagc gttctgctgg agaagaagcg
     1621 caagcaggag ctagaacttc tgagaaagcg gtaccaaaaa aagtttgagg tgatggaaca
     1681 atttagagca cttcatgaag agcttaaaga ttctgtggac cagattgaaa atgcgaagat
     1741 aaggctgaag cgcatgaaag aagaggatga gagagagctc ctcaaggatc taacaactgc
     1801 agcatcctat gataaagaac tagataagct tagcaatctg gatgatcact acacaacctc
     1861 aatcgagtct gtgaaccagg acattgaaga ggacgaagaa gtagtgagtg aggtcctgag
     1921 agaaacacag agcacatcaa atgaactagc gaatttaatg agaatgatag aggatttgaa
     1981 aagacagttt gatcaatatt gctggatcca aaggaaatat gaacaggagt acacagaggc
     2041 acttaataat tattactccg caaaaaacac gtgggacatt gagctttcta atattacaaa
     2101 agacttcaac aatatctcaa cagtgtatgt agagacgtta gaagaaaaca agaggcttaa
     2161 atatgaaatt gacaatataa cagaagaaat tggagaaagt ataaggaaaa gagcagagct
     2221 cgaggatgaa atccactcat ttagggaaat gaagacgagg aataacaatt atctcaaaca
     2281 tctctacaag cagtcttatc atgttggggc cgtctaccac atagctaggc acaaaacaga
     2341 tgaactggag gataaactag cagaagtgag aagaaaattc aaggttagag aagattttct
     2401 gaagaggctt ataagaagtc acatagctac agggattgag gttcagaaaa ggctgtattc
     2461 cgttgaagaa tcccagtttg ctgaaatgca ggagtatata agaagaaagg tactctataa
     2521 tgcggctttg ttagaggtac aggagccact gaaagagttt gaaagagagg ctgagcgaat
     2581 caggaacatt cacagagagc acgctaaaat ggttcatgac atacggagga ggaaagaacg
     2641 tgttaaaaga aaagtagagg caacaaagaa aaaattacag aaaaaaagca agaaaagcct
     2701 caaggaactc acaaaaactg agggaaaggg cacaatgatt caccaagaaa ttgagatagc
     2761 taaaaccaaa acatttgttt tccatgagaa aagcaaggag ctgagcaagg agataatgat
     2821 aatggatctg gagaggaaaa gcttcgaaga aaaacttgta aagttgcagg aagagttcat
     2881 gaagttgcga ttcgacaggg aacacataca cggcgtgttc gaccacatct taagagagag
     2941 acagcgctgt gaagagagga tcttcgatga ggagaggagg ttcaaaaggc ttacagaaat
     3001 gaggaaggac accctggaga acatcttgga acgtcaaagc gatttactag acgaaaacct
     3061 acgtttagcc aaagagtatc aaaacacaca gatgcttttc ttaaaggaga aagaagctta
     3121 cttcaatgga tatgacagat tgctgtcact caattcttca gtttctgata agaaaaagct
     3181 ctgtcagctg caaagaaagc tgggccagaa atggcaagag tacttccgac tgttgatcct
     3241 ttttaaccag tctaagctgg ccaagttcca gggagactcc cagaacagca ttcagaaaat
     3301 atttgttgtg caggaggaat cctcaagtct aattcaacac atcttagatt tcttccagac
     3361 tctcccaact agtccatgtg aagaagatga ctaaccaaac aatcaatgta tcttggaagc
     3421 tgaaataaaa gacaggaaaa gtcgcacagt tcagataaca gtgtaattgg acattcacct
     3481 gtttgccatt tcacacttcc atggacgaaa aactcactca cctcccagca tgctttgcca
     3541 ctctcttact tacagcaaat ccataacaat gaaacaggtg actttcatgc cgctgtcagg
     3601 aacgatctaa tttcatctct gggtgactga ttgcaattgg ctttgcctca tctgataatt
     3661 aatctatgtc accattaatt ggaagagaga ataattactg gtggtgttga cagtgactgc
     3721 tggcttcccc agatttcccc actgtgttgg cccaaataaa ggctttgcaa gtcagtactt
     3781 aaagtttgtg taaacgttaa cagtgcctat acccatgtga cacccttaga tgctctgtct
     3841 aatacacttt tgtttttctg tttaccaatc ttttttagct cactgagagc tgtctctctc
     3901 aatcactcct caatgttcta tcttaatttt gtggaagttt aaagttttca atgagctgga
     3961 gatgaatgat taatgaataa atttaaatgc ttcattttgt ccatggatca ttagtcaagt
     4021 cctttgtggt aaggacctga gaaaggaggg gaaattattg agacattagc ctgcagcaag
//
