LOCUS       NM_001164400            2620 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Rattus norvegicus coiled-coil domain containing 175 (Ccdc175),
            mRNA.
ACCESSION   NM_001164400 XM_001080587 XM_576045
VERSION     NM_001164400.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC087160.1.
            
            On or before Aug 26, 2009 this sequence version replaced
            XM_001080587.1, XM_576045.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087160.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132294,
                                           SAMD00132296 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2620              BC087160.1         1-2620
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..2620
                     /gene="Ccdc175"
                     /note="coiled-coil domain containing 175"
                     /db_xref="GeneID:500668"
                     /db_xref="RGD:1560894"
     exon            1..171
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..2465
                     /gene="Ccdc175"
                     /note="uncharacterized protein C14orf38 homolog"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 175"
                     /protein_id="NP_001157872.1"
                     /db_xref="GeneID:500668"
                     /db_xref="RGD:1560894"
                     /translation="MAMRSWTPDQGFVDRKLVRPASVSTSLSLELCTFPSTLGSSVAA
                     NALEQLLVVEKSLQGDYFTCNEEVKTFLKDITVAVKKLEEMRKNTIELLEIESMELSR
                     LYFLLETVPNSMHKELQECILEARRLNILEISQVKGKIEKTNDEIKFLNDKIIELKNM
                     NEALGIKQVELAKQHAKFVLLLNQTLEEKAVATICINDTYTRIKFEKEEIGLQKQCLQ
                     DATDLIEKHKQEHRKKKERLAERIKDVKQSCEEKRKEAYNKRKELTRLQNKIIKMKQT
                     VTTNAVMINDKSLEIMRLRETADLWKKKVEDMKRVCESLEEKLLFFLTHKQQIDSVSS
                     EKKSGFISQIQQVAEKLQKINKENKDLRDRLNTLLKQYKITLKEEEAMSLQRQKMAEE
                     HQKQMELLNQKETFLTQRKLDIKNMEEGFSTLRDLNVATKEVYRKQIKLLTENLEREL
                     QRWVVNQWRLLCSRKRHSRWLHKTKLTLRKIITEIEIAEEKRRQLLKETKRRQKEISR
                     FVNQIETIKEQLEVEEKEYIKKEKKLMKELNKYEDLIIKEAQINKVKEEQLVETLPRL
                     QIAEDDFQEKSRTLKSLQNDISAKKQEETLLSTYIFRYRKDIIRCTNNTETVKRDMRH
                     IRTLESEKTQSHFEALKNLENEIYVNDQKLALLILENKKLRDYLAYLKKHTKEYSEKQ
                     IVTVQNSGDLSWQLIAQHSQYSDLLAEFQIKIKELVDTGEETLQEIRSLASKLRYRDE
                     KIESISAWLLGGIERLHSLMEEESPSSLSKEDLQKAGMKQKEEKTLRFSPSLHTRRDT
                     LSRNCKMIKKRSRSPKNKP"
     exon            172..257
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            258..369
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            370..505
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            506..734
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            735..857
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            858..967
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            968..1049
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1186
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1297
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..1369
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1505
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1637
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1638..1776
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..1856
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            1857..2009
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            2010..2112
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2156
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            2157..2340
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            2341..2463
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
     exon            2464..2592
                     /gene="Ccdc175"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caacaaacaa gatggctatg cgctcctgga ccccggacca ggggtttgtc gacagaaagt
       61 tggtgcggcc agcctcggtc tccacaagcc tgtccctgga gctatgcact ttcccctcta
      121 ccttgggctc ctcggtagcg gccaatgcat tagagcaact gttagttgta gagaaatctc
      181 tgcaaggtga ctatttcacg tgcaatgaag aagttaaaac ctttcttaag gacattaccg
      241 tggcagttaa aaaactggaa gaaatgcgaa aaaacacaat agagcttctg gagatcgaaa
      301 gcatggagct gagcaggctc tacttcctgc tggagactgt gcccaacagc atgcacaagg
      361 aactgcaaga gtgtatcttg gaagctcgca gactcaatat cttagagata agtcaagtga
      421 aaggaaagat cgagaagacg aatgatgaaa taaagtttct aaacgacaaa ataattgagc
      481 tgaagaacat gaatgaagct ctggggataa agcaagtgga gctggcgaag cagcatgcaa
      541 agtttgtcct gctcctgaac caaactttgg aagagaaagc cgtagcaacc atttgcataa
      601 atgacaccta taccagaata aaattcgaga aagaagaaat aggactccaa aaacaatgtc
      661 tgcaagatgc aactgactta attgaaaaac ataagcaaga gcataggaaa aagaaagaac
      721 gtttggctga acgtattaaa gacgtgaagc agtcctgtga agaaaagaga aaagaggcgt
      781 ataataagag gaaagaattg accagattac aaaataaaat aataaaaatg aagcaaacag
      841 ttactaccaa tgcagtgatg attaatgaca aaagcttaga aataatgcgg ctacgggaaa
      901 cagcagacct ttggaagaaa aaagtagaag acatgaagag ggtttgtgaa agtttggagg
      961 aaaaactgtt gttttttctg actcacaagc aacagatcga tagtgtatct tctgagaaga
     1021 agagtgggtt catatctcaa atacagcagg tggctgaaaa actacaaaaa attaataaag
     1081 agaacaaaga tctccgagat agactgaaca cgctcctcaa acagtataag attacgttga
     1141 aggaagagga agctatgtct ttgcagagac agaagatggc tgaagaacat cagaaacaga
     1201 tggagcttct taatcagaaa gaaaccttcc taacacaaag aaaactcgac atcaaaaaca
     1261 tggaagaagg attttcaacc cttcgtgacc ttaatgtagc aacaaaggaa gtatatcgaa
     1321 aacaaataaa actcctgact gaaaatctgg aaagagaact tcagagatgg gtcgtaaatc
     1381 agtggagact actctgttcg agaaaaagac attcacgttg gctacataag acaaagttga
     1441 ccttgagaaa aatcataacc gaaatagaga ttgcagaaga aaaacgacgt caattgctca
     1501 aagagacaaa gcgtagacag aaggagatca gtcgttttgt gaaccaaatc gagacaatta
     1561 aggagcagct agaggtagag gagaaggaat acatcaaaaa agaaaaaaag ttaatgaaag
     1621 aactaaacaa gtatgaggat ctaatcataa aggaagcaca gattaacaaa gtaaaagagg
     1681 agcagctagt tgaaaccctc ccacggcttc agatagcaga agacgacttc caagaaaaaa
     1741 gcaggacact caagtccctc cagaatgaca tttcagcaaa gaaacaggag gagactttgt
     1801 tgagcaccta tattttccgc tacagaaagg acatcatcag atgcacgaac aacacggaga
     1861 ctgtgaagcg agacatgaga catatacgaa cccttgaaag tgaaaaaacc caaagccatt
     1921 ttgaagccct aaagaactta gaaaatgaaa tctatgtaaa tgaccaaaag ctggcccttc
     1981 tcatcctgga aaataaaaaa ttaagagatt atcttgccta tctgaagaaa cacaccaaag
     2041 aatactcgga gaagcaaata gtaaccgtac agaactcagg tgacctctct tggcaactga
     2101 tagctcagca ctcacagtat tcagatctgc tggcagaatt tcaaatcaaa attaaggaac
     2161 tggtggacac tggagaagaa actttgcaag aaattaggtc tctggcatcg aagctgcggt
     2221 acagggatga gaagatcgag tccattagcg cctggctcct tgggggaatc gaaaggctgc
     2281 acagtcttat ggaagaggag tcaccatcta gcctcagtaa agaggacctt cagaaggccg
     2341 gaatgaagca aaaggaggaa aaaacacttc gtttctcacc gtccctgcat acaaggagag
     2401 acacattaag caggaactgc aaaatgataa agaaacgatc gaggagcccc aaaaacaagc
     2461 cgtgaacaag catctgaaca agtcttcaac caaactgtct ctaaacagga agtctgttat
     2521 ataaattatg ctttattttt ataatattac taaaacactg tattggtgaa aataaataga
     2581 cattgacaaa gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
