LOCUS       NM_001134641            4657 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 171 (Ccdc171),
            mRNA.
ACCESSION   NM_001134641 XM_017593920 XM_017602920 XM_578462
VERSION     NM_001134641.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Sep 11, 2019 this sequence version replaced
            XM_017593920.1, XM_017602920.1, NM_001134641.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This RefSeq transcript is based on
            transcript alignments from orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-222               JAXUCZ010000005.1  102965911-102966132
            223-366             JAXUCZ010000005.1  102974956-102975099
            367-502             JAXUCZ010000005.1  102979638-102979773
            503-677             JAXUCZ010000005.1  102982799-102982973
            678-868             JAXUCZ010000005.1  102987190-102987380
            869-1000            JAXUCZ010000005.1  102990293-102990424
            1001-1155           JAXUCZ010000005.1  102991126-102991280
            1156-1267           JAXUCZ010000005.1  103023761-103023872
            1268-1360           JAXUCZ010000005.1  103024157-103024249
            1361-1521           JAXUCZ010000005.1  103026537-103026697
            1522-1660           JAXUCZ010000005.1  103053551-103053689
            1661-1763           JAXUCZ010000005.1  103068296-103068398
            1764-1870           JAXUCZ010000005.1  103085708-103085814
            1871-1960           JAXUCZ010000005.1  103087460-103087549
            1961-2161           JAXUCZ010000005.1  103088415-103088615
            2162-2329           JAXUCZ010000005.1  103091805-103091972
            2330-2518           JAXUCZ010000005.1  103093521-103093709
            2519-3023           JAXUCZ010000005.1  103113073-103113577
            3024-3140           JAXUCZ010000005.1  103114391-103114507
            3141-3367           JAXUCZ010000005.1  103126690-103126916
            3368-3550           JAXUCZ010000005.1  103127549-103127731
            3551-3736           JAXUCZ010000005.1  103130121-103130306
            3737-3882           JAXUCZ010000005.1  103185754-103185899
            3883-3937           JAXUCZ010000005.1  103189275-103189329
            3938-4069           JAXUCZ010000005.1  103236658-103236789
            4070-4222           JAXUCZ010000005.1  103265991-103266143
            4223-4657           JAXUCZ010000005.1  103328287-103328721
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q31"
     gene            1..4657
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /note="coiled-coil domain containing 171"
                     /db_xref="GeneID:502957"
                     /db_xref="RGD:1560884"
     exon            1..222
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            223..366
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     CDS             320..4441
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 171"
                     /protein_id="NP_001128113.2"
                     /db_xref="GeneID:502957"
                     /db_xref="RGD:1560884"
                     /translation="MSLSTSSNATAGDTQRVKSASLDVKQMLKNETESDITADLRKKL
                     HRAKKEKLEMTTKHNAELSSHESQIARLRSEVEKGEALRQRLEYDLAVVRKEAGLGRR
                     AAEERLAEAQRIQEKLCAQNSELQGKANEIEKTLQTSQEKWKEECRRFEHDLEERDNI
                     IQNCNHEYELLMQEKNRLQKTLQEALEKHQQEKDEMEAHVKETALDDFRLQAEQWEAE
                     RRELQLIVQQQSFLFKSVWGGLLYGCPQEHGWGLLQELGQLSRGHITEDNVPSSPRTM
                     SCLMMQNDSSECRPECVFREDRGTEGNMSAYVLYCSSAMKATTLRVRKLEESIEAERA
                     AHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKHNA
                     QESCAKLNLLEREFFSQNKNLNEEIEDQKKVIIDLSKRLQYNEKSCSELQEELVLAKK
                     HQAFLVETCENNVKELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQ
                     NKLEDASNELNNINEAKEKTSNELDSTKQKIESHIKNTKELQDRLTEVHKELSHLRAK
                     CADREALITTLKVELQNVLHCWEKEKTCRAQCESELQKLSQAFQKDTEEKLTFLHTLY
                     QHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKISHLEYICKNKS
                     DTMRELQQTQEDTFNKVAEQIKAQEGCWQKQKKELEFQYSELLLEVQRRAQKFQEIAE
                     KNMEKLNCIENSHEKLVIENSHFKTTLSRTQREQTCLLAACALMAGALYPLYSRSCAL
                     STQRDFLQEQVNSLELFKLEIRTLAQALSAVDEKKHEEAKTKKKTFKGLIRVFRKGVI
                     AILAANRLKLLGQSCAFLFTWMESRKEGIGMLVCAGEPKDKRRFPKHQREQFRCLQAL
                     TWLTSSDLLGAIISSMTELQEVISKTDPNSRICGHLLIGAAKNSFAKLMDKISLAMES
                     IPLRSSRSITYVDKDSLVQRLARGLHKVNTLALKYGLSSHMPIMKSTASLQKQIFGFT
                     QRLHAAEVERRSLRLEVTEYKRTMHEMKKELDKSQSLQTQLNEFKHSKLITHEKFESA
                     CEELNNALLREQQAQLLLNEQAHQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKM
                     ELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDKECVANHMRTIENML
                     HKVRDQISLSRTAATRNDFTLQLPKLHLETFAMEGLKGGPEVVACQAMIKSFMDVYQL
                     ASTRISTLEKEMTSHRNHIATLKSELHTACLRENESLQSMGSRDHSNPSVPSRAAAPM
                     DTAGDFLPLQAELDTTYTFFKETFMSTAPHSFSSSQSSPGMPANTKRPSQIGL"
     exon            367..502
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            503..677
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            678..868
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            869..1000
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1001..1155
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1156..1267
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1360
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1521
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1660
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1763
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1764..1870
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1871..1960
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            1961..2161
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            2162..2329
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            2330..2518
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            2519..3023
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            3024..3140
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            3141..3367
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            3368..3550
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            3551..3736
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            3737..3882
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            3883..3937
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            3938..4069
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            4070..4222
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
     exon            4223..4657
                     /gene="Ccdc171"
                     /gene_synonym="RGD1309931; RGD1560884"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggagaaa gtcgcggcgg accagagtcc ggtcgcgtgt tcccagcccc cggaagtggc
       61 cgttgtaaac ttcaccttgt agtctttctc catcctggcc ctagagtcca tcggctttcc
      121 tcagttgtca ctctttctcc cgagggttgc ctggcctccc accccgagac ctgaagctgc
      181 gtgggggtcg tgggggtgca ggctggacca cgcgagtccg agactttagc ccatctaacc
      241 cggaagccac agacatcacc ataaggaagt atatttttaa gaagcagtga ggtgttttga
      301 aaagggttga agacttacca tgagtttaag cacgtcaagt aatgccactg ctggggacac
      361 ccaaagggtg aaaagtgcct cattggatgt aaaacaaatg cttaaaaatg aaacagagtc
      421 agatatcact gctgatctca gaaagaagct ccaccgggct aagaaggaga agttagagat
      481 gacaacaaag cacaacgcag agctgtccag ccatgagagc cagattgcca ggctgcggtc
      541 tgaggtggaa aaaggagaag cgctgcggca gcgtctagaa tacgacctgg ctgtcgttag
      601 gaaggaggct ggtctgggaa gacgggcggc ggaggagaga ctggcggagg ctcagcggat
      661 tcaagaaaag ctctgcgctc agaattcaga acttcaagga aaggcaaatg agattgagaa
      721 aacacttcag acttcccaag agaaatggaa agaagaatgc aggagatttg agcatgattt
      781 ggaggaacga gacaacataa ttcaaaattg caaccacgaa tatgagttac ttatgcagga
      841 aaaaaacaga ctacaaaaaa ctctacagga ggccctggaa aagcatcagc aagagaagga
      901 tgagatggag gctcatgtca aggagaccgc attggacgac tttagattac aggcagaaca
      961 atgggaagca gaacggagag agttacagct gatagtacag cagcagtcct tcctcttcaa
     1021 gtctgtctgg ggtggcctat tgtatggctg cccacaagag catggatggg gattattgca
     1081 ggagcttggg cagctcagcc gtggccatat cacagaagat aatgtccctt cttcccctag
     1141 aaccatgagc tgcctaatga tgcagaatga ctcctcggaa tgcaggcctg agtgtgtgtt
     1201 tagagaggac cgtgggacag aagggaacat gtcagcctat gttctgtact gtagcagcgc
     1261 catgaaagca actactctga gggtgaggaa gttagaagag agtattgaag cagaaagagc
     1321 agcacacttg gaatcaaaat ttaattctga aattattcag ttacggattc gagacctcga
     1381 aggagcttta caagtagaaa aagccagtca ggcagaggct gtggctgacc tggaaatgat
     1441 caagaatgaa ttcaaagagg ttgagagtgc gtatgagcga gagaagcata atgcccagga
     1501 gagttgtgca aagctgaact tattagaaag agaatttttc tcccaaaaca agaatctaaa
     1561 tgaagagatc gaagatcaga agaaagtaat tatagatctt tcaaagagac tccagtataa
     1621 tgaaaaaagt tgcagtgagc tacaggagga acttgtgttg gctaagaagc accaggcctt
     1681 cctagtggag acatgcgaga ataacgtgaa agaactggaa tccatcttgg gcagctttag
     1741 cgtgtcagcg cagtggacat caggcgtcca caaggacaaa gataagcccc ccagcttctc
     1801 tgttgtcctt gagactttga ggcggacctt gacagattac cagaacaagc tggaagatgc
     1861 atctaatgag ctaaacaaca taaatgaggc caaggaaaag acgtccaatg aactggattc
     1921 taccaaacaa aagattgagt ctcacattaa aaatacaaag gagctgcagg ataggctgac
     1981 tgaggtccac aaggagctaa gtcacttgcg tgctaagtgt gcagaccgcg aggccctaat
     2041 aaccacgctg aaagtggagc tgcagaatgt gctgcactgc tgggagaagg agaagacctg
     2101 tagggcacag tgtgagagtg agctgcagaa gctgtcgcag gccttccaga aggacactga
     2161 ggagaaacta accttccttc acaccttgta tcagcacttg gtagcaggct gtgtgctcat
     2221 aaaacaacca gaaggcatgt tggataaatt ctcctggtct gagctttgtg cagtcttgca
     2281 ggagaatgtt gatgccctca ttgcggacct taacagggct aatgagaaga taagccacct
     2341 ggagtatatc tgtaagaaca agtccgatac aatgagagag ctccagcaga ctcaggaaga
     2401 caccttcaac aaggtggccg aacagatcaa ggcccaggag ggctgctggc agaagcagaa
     2461 gaaggagctg gagttccagt actctgaact tctcttggag gtgcagagga gagcacagaa
     2521 atttcaagaa attgcagaaa aaaacatgga aaaattgaac tgtattgaga actcccatga
     2581 aaaactagtt atcgagaatt cacatttcaa aaccacattg tccaggactc agagggagca
     2641 gacttgcttg ctggcggcgt gtgcactgat ggccggtgcg ctgtatcccc tctacagcag
     2701 gtcatgtgcc ttatccacac agagggactt tctccaggag caagtcaaca gcttggaact
     2761 attcaaactg gagattagaa ccctagccca ggcattgtca gcggtggacg aaaagaagca
     2821 cgaagaagcc aaaacgaaga aaaaaacgtt caaaggattg atccgtgtat tccggaaagg
     2881 tgtgattgca atcttggcag caaacagact caagcttttg ggccagtcct gtgcctttct
     2941 tttcacctgg atggaaagtc gtaaagaagg cataggcatg ctagtgtgtg ccggggagcc
     3001 caaagacaag cgcagatttc caaaacatca aagggaacag ttccgatgtt tacaggcact
     3061 cacttggctt accagctctg accttctagg tgcgattatc agttctatga ctgagctgca
     3121 agaagttatt agtaaaacag atccaaattc caggatttgt ggacatttac tcataggtgc
     3181 agccaagaat tcttttgcga aactgatgga taaaattagt ttggcaatgg aaagtatacc
     3241 tctgcgtagc agccggagca taacctatgt agacaaagat tccctggttc agaggctggc
     3301 ccgaggactt cacaaagtga acacgctggc cctgaagtat ggtttgagca gccacatgcc
     3361 cattatgaaa agcactgcct cgttacaaaa gcaaatattt ggatttacac agaggctgca
     3421 cgcagctgag gtagagcgcc gctccctgcg tctggaggtg acagaataca aacgaaccat
     3481 gcacgagatg aaaaaggagc tggacaagtc acagagcctg caaacacaat taaatgaatt
     3541 caagcactct aaattgatca cccacgagaa gtttgaaagc gcatgtgaag aactaaacaa
     3601 tgcgttgctg cgggagcagc aggcacaatt gctgttgaat gaacaggccc accaactgca
     3661 ggagttgaac tacagacttg aattgcactc cagcgaggaa gctgacaaaa accagactct
     3721 cggggaagct gttaagagtc tctccgaggc aaagatggag ctcagaagga aagatcaatc
     3781 tctacgtcag ctcaatagac atctcaccca gctggagcag gacaagcgtc gactggagga
     3841 gaacatccgt gatgcagaga gtgctctccg catggcggcc aaagacaaag aatgtgtcgc
     3901 taatcacatg agaacaatag aaaacatgct tcataaggtc agagatcaga tctcactgtc
     3961 acggactgca gcaactagga atgacttcac cctgcagcta cccaaactgc acctggagac
     4021 ctttgcaatg gaggggctca agggtgggcc agaggttgta gcatgccagg ccatgattaa
     4081 aagtttcatg gatgtctacc agcttgcaag tactcgaatc tctacattag agaaggaaat
     4141 gacatcgcac cggaatcaca tcgcaactct caagtctgag ctccacacag cttgtctaag
     4201 agagaatgaa agtttacaat caatgggctc cagagaccat tccaacccct cggtcccttc
     4261 aagagctgcc gcccctatgg acacagctgg ggactttctt ccattgcaag cggaacttga
     4321 tacaacttac actttcttca aggagacgtt catgagcacg gcaccccatt ctttctcctc
     4381 atctcagtcc tctccaggga tgcctgctaa taccaaaaga ccatctcaga tcggattatg
     4441 attgttgtga aataaaaaaa aggaggaaga gtagtggtat aattaaaatt gttttgaagg
     4501 gggattctct tatcagttga gttttgttta attacgagtg agggtgggcc tttaaacatg
     4561 gtgtgacagc ctgatgtgca cagggctctg tcaccttaaa taatgaacta acccactttt
     4621 ttcctcccta agttttattt attatcacag ttgctca
//
