LOCUS       XM_214760               4229 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 170
            (Ccdc170), transcript variant X1, mRNA.
ACCESSION   XM_214760
VERSION     XM_214760.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_214760.11.
            
            On Jan 21, 2021 this sequence version replaced XM_214760.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4229
                     /gene="Ccdc170"
                     /note="coiled-coil domain containing 170; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 40 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:292266"
                     /db_xref="RGD:1310945"
     CDS             526..2682
                     /gene="Ccdc170"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 170
                     isoform X1"
                     /protein_id="XP_214760.4"
                     /db_xref="GeneID:292266"
                     /db_xref="RGD:1310945"
                     /translation="MSHSSSLGSGSPECPRNASPPEGTADHHPEVPVTREQLNHYRNV
                     AENVQSELAAALVRFECAQSELRELRSKMLSKEVCCQELKAEMESYKENSARKSSLLV
                     SLRGRIQELQEESAAFSASKIRAEASAHAMMKENQELMKKVLELDEKLQDCSKANEES
                     KKQGSETLRRHEEFRTQLRDCLSLDKKCEEAPDEDLVLKLKELCKENTSLKGQLTTLE
                     ETVSVHEMEAKANRETILRLAADVSREQTKAASWAEEKDKLNQDLLSAAEARTALERE
                     AMLYQERLLASQRAWDASKQELNQLRKSCQQLDVSLKASREAATASQSQNACFREKLA
                     ALLCSRFDIAESTEDAILEKIRVLGIEEENQKRMASQLEAQISELVGKLGNESESHQK
                     ALQRAHEAEKKLEALQGQLSHLEGELLSGDVVRDNLNLEKQKYLKFLDQLSEKMKLGH
                     IAADLGFDMRLDVVLARIEQLVHLESNAVIENKTMAHNLQRKLKTQKERLESKEVHMN
                     LLRQKITQLQQEKEARSALAMERDEAHLSVRKLEKKVERMQKELSSCQEYNTELKAKL
                     ADTSELKIKTLEQTKAIEDLNQSRGELEKMKENAEKKLMLVMSELETTVQEAQANQER
                     TRAMIELASSELRILKKSLDEAERREQQLADFREVVSSMLGLNVTSLALPDYEIIKCL
                     ERLIHSHHHHHHHHHFVPCACLKDMAAEQASPHSAT"
ORIGIN      
        1 aggcagactt gttgagaaga caagatgaga aaagtcaggg caggccacat gctttgcaga
       61 gccgggtata aagtgcatga accactcttg tgcaaagcaa gcaagcaagc aagcaaacaa
      121 acaaacaaac agctaagaag tttggatgga cctgtggttc cgttatttga gtgcttgtcc
      181 aacatacctg agaaggcctt gggttcagtc tccagcacca tctaaaacct gctatttgca
      241 ttcactttgg tagtgttttc ccttcccccc tttagagcga tctttctccc gaagtgtcct
      301 tggtagctag gaggacttgt tcctaaggga taattgcctt gtggcctgtg ggtctccgag
      361 gagacttggc cactggttag tgcaggtcat aggcgccgcc tccaattctg tttacttgtt
      421 gccccaggag acgcactccg gtcccaggct ctgtgcacta cagtgctact gcatcgtggg
      481 tctcctgcat cgtgggtccc cgcagcatct tccagcccag ccagcatgag ccacagcagt
      541 tccttgggct ccgggagtcc ggaatgcccc cgcaacgcct caccgccaga gggaactgcc
      601 gatcatcacc cagaagtccc tgttacccgg gaacagctga accactaccg gaatgtggct
      661 gaaaatgttc aaagtgagct tgcagcggcg ctggtcagat ttgaatgtgc tcagtccgag
      721 cttcgagaac ttcgctccaa gatgctttct aaagaagttt gctgtcagga gctgaaggca
      781 gaaatggaga gctataaaga aaacagtgcc agaaagtcct ctctcctcgt ctctttgagg
      841 ggcagaatac aggagctcca agaagaatca gcagcgtttt ctgcttctaa aatcagagca
      901 gaagcctctg ctcatgccat gatgaaggag aaccaggaac taatgaagaa agttctagaa
      961 ctggatgaga aattacaaga ctgttcaaag gcaaacgagg agtctaagaa acaaggctca
     1021 gagactctcc ggaggcatga agaatttcgt actcagcttc gtgattgctt gagtctagac
     1081 aagaagtgtg aggaggcacc ggatgaagat ttagtcttaa agcttaaaga gctgtgcaag
     1141 gaaaacacat ccctgaaagg acaactcact actcttgaag agactgtaag cgtccatgag
     1201 atggaggcaa aggctaacag agaaaccatc ctgaggctgg cagccgacgt cagcagggag
     1261 cagacaaagg ctgcctcctg ggcagaggag aaagacaagc taaatcagga cttgctcagt
     1321 gctgcggagg caagaacagc tctagaaagg gaagctatgc tctaccaaga acggctgctt
     1381 gcgtctcagc gagcctggga tgcttcgaag caggagttga accagctgag gaaaagctgc
     1441 cagcagctgg atgtgagcct gaaggccagc agggaggccg ccacagcctc acaaagccag
     1501 aacgcctgct tcagggaaaa actcgcagct cttctttgca gcagattcga catagctgag
     1561 tccactgagg acgccatatt ggagaagatt cgagtgctag gcattgagga agagaaccag
     1621 aaaaggatgg cctcccagct tgaagcccag atttccgagc ttgttgggaa gttgggaaat
     1681 gaatctgagt ctcaccagaa agccctacag agggcccatg aggcagaaaa gaagctggag
     1741 gctcttcagg gtcagctgag tcacctggag ggagaactgc tttctggaga cgtcgtgaga
     1801 gacaacttga atctagagaa gcaaaaatac ttgaaatttc tggaccagct gtcagagaaa
     1861 atgaaattgg gccacatagc tgctgacctt ggctttgaca tgcgtctgga cgtagttcta
     1921 gctcgcatag agcagctagt ccaccttgag agcaatgctg tcatagaaaa caagaccatg
     1981 gctcacaact tacagagaaa gctaaagact cagaaagaaa gactggagag caaagaagtg
     2041 catatgaacc tccttcggca gaaaattacc cagctgcagc aggagaaaga ggcgcgctcg
     2101 gccttggcca tggagaggga tgaggcccat ctttctgtgc ggaagctgga gaagaaagtg
     2161 gagaggatgc agaaggagtt gagctcgtgt caggagtaca acactgagct caaagccaaa
     2221 ctggcggaca ccagtgaact caagattaaa actttggaac agaccaaagc cattgaagac
     2281 ttaaatcaat cccgaggtga gctggagaag atgaaggaga atgcagagaa aaagcttatg
     2341 ctggtcatgt cagagctgga aactacagtg caggaggctc aagcaaacca ggaaagaacc
     2401 agggccatga tcgagttggc cagcagtgag ctgaggatcc tgaagaagtc tctggatgaa
     2461 gcagagagga gagaacagca gctggcagac ttcagggaag tggtttccag tatgctgggc
     2521 ttgaatgtga cctctctcgc tcttcctgac tatgagatca tcaaatgttt ggaaagactg
     2581 atccattctc accaccacca ccaccaccac caccactttg ttccctgtgc ctgcctcaaa
     2641 gacatggctg ctgagcaagc tagccctcac agcgccacgt agaacttctg cactgatcac
     2701 ttgtctcccc gagggaggaa ctaaggcatg ggatacgatt ctccagttat gcagttcata
     2761 aattcctcat acttttgaaa tttagccatt gtgcatgact aatacattct ctgatgattt
     2821 agcaaaaata tatcatgggt gaaaaaaagg tctcccaaag tgccatccct gggccatttc
     2881 ctgccaggcc tcgcaacctg agttctatcc ttgggacaca catggcagaa ggaaagaact
     2941 gacttctgca agctgtcctc tgacctatac acatgcttta ttacttaagt ggagacacac
     3001 acacacacac acacacacac acacacaaag agagagagag agagacagac agagacagag
     3061 acagacagag aaaataagta aatataaaaa gtaccagtcc tagattaata ttcagcacta
     3121 aagcacccat taattcatta gttagcacat ggagacttac cggaatccct agattcatgc
     3181 gtacattggg acaatatgag cacagagttc agaacagtgg agcatctggg ctagtgttac
     3241 tgaccacttt aaatcttaac catgtacaga ggttttctga aaatattatt taaaattatt
     3301 ttatatttag gtgtctgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgcat
     3361 gcgtgtaggt gtcagtagta accgtagaga gagtcagatc tttggtatca gagttactag
     3421 cagttgtaaa gcacttgatg tgggtgctgg gaactgaact ccagtcctct gaacagtagc
     3481 aagtgctgtt aactatctct ccagcctaac aaaaactatc atctgtctgc atacaatttg
     3541 acacataata atgaactatt tgtagatttt ggagtggcat tccaatccac atgtacaacg
     3601 tgtaaccatg agaacatggt aacatggtag agtcttaaaa cattaatcta catgctttcc
     3661 agggctcaga aacaattcaa ctaacttagc attgtgcatg gttagtgttg gagccaggat
     3721 atacaagata gaagctgtac cacttataac ccacagtttt agatttacct tggttttgag
     3781 gctgatagga attgctggaa taaaggaaga gaggaaactc tatgatcagg aggagacatc
     3841 tacaggtaca cagtttaaaa agtgactcat ctgaatagcc ctcatatagg tctgagggac
     3901 gataagaagc atgcatgctt ttactactgc tcctaatggt ggctttgaaa gtgtgaacag
     3961 ggctgacctc agttctttag aatcaaaatc tctcacacaa gcccagtctt acaggatgga
     4021 tgaatcatct tcagttttat tcaccaaata ctcttaacag tgaaggaacc ttctcatggt
     4081 tttgagtcta tcataaataa gtctctccct tctttcaaaa cttctgttgg acaaatatat
     4141 tgcagaaaac cataatctta gcactactga gaatactttc tattagatag tttatcttat
     4201 tttaaatata tgaaacataa acttataaa
//
