LOCUS       NM_001014067            2141 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus coiled-coil domain containing 17 (Ccdc17), mRNA.
ACCESSION   NM_001014067 XM_233417
VERSION     NM_001014067.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Kang,B.W., Jeon,H.S., Chae,Y.S., Lee,S.J., Park,J.S., Choi,G.S. and
            Kim,J.G.
  TITLE     Impact of Genetic Variation in MicroRNA-binding Site on
            Susceptibility to Colorectal Cancer
  JOURNAL   Anticancer Res 36 (7), 3353-3361 (2016)
   PUBMED   27354594
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Shultz,M.A., Zhang,L., Gu,Y.Z., Baker,G.L., Fannuchi,M.V.,
            Padua,A.M., Gurske,W.A., Morin,D., Penn,S.G., Jovanovich,S.B.,
            Plopper,C.G. and Buckpitt,A.R.
  TITLE     Gene expression analysis in response to lung toxicants: I.
            Sequencing and microarray development
  JOURNAL   Am J Respir Cell Mol Biol 30 (3), 296-310 (2004)
   PUBMED   12947022
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CO385240.1,
            CK476945.1, CO398762.1, BI292365.1, CF114603.1 and AA926261.1.
            
            On Feb 9, 2008 this sequence version replaced NM_001014067.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16676784,
                              SAMN16676785 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-690               CO385240.1         1-690
            691-767             CK476945.1         637-713
            768-1392            CO398762.1         50-674
            1393-1461           BI292365.1         240-308             c
            1462-1705           CF114603.1         254-497
            1706-2141           AA926261.1         1-436               c
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..2141
                     /gene="Ccdc17"
                     /note="coiled-coil domain containing 17"
                     /db_xref="GeneID:500528"
                     /db_xref="RGD:1598211"
     exon            1..251
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..1910
                     /gene="Ccdc17"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 17"
                     /protein_id="NP_001014089.2"
                     /db_xref="GeneID:500528"
                     /db_xref="RGD:1598211"
                     /translation="MADYSGKSGLLPCESCDMVFRSRALLAKHTKRFCIGGLTPEIMA
                     QEQRRSDQEATKSSLKRLTEETELLRLSLQKIGPWATDTSQTAGSPEERLRDLQGTRA
                     RRVEETEAQSRALKQRGEELKRRLHSVAGPKGGLPRPIVLERELRELREEASRTRGAL
                     QTLGARVQALQPQPAHQQDAKRVVEFCCLPLRYNPETLAEEIRVLREVYVRGGGRDPE
                     VLDKILQLQVEASALELRRSQNRKEKASAASEEALMVEAENRILEAEILALQKQKVLS
                     LSPWGSRDLWRHLSRRSDNSLLPPPVAPPMPPVTSSTKVQDFHGTSKAIINGTMTRNL
                     GLDLHFLPASNVLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLMTSLARDGQDTGGAT
                     ALPPALCLPPPSASGPIGNCAILASRQPVPRLPPSPLLSLICKLQAWQGVTWTPQPKA
                     WASLLLFDQSLRVLSGRWRLPLRVPPTTSLSFAQMNEMPQVSVEGRDWLHPKIPMEYH
                     FLCQAGQAELFLRLVNARDTDAQTLAEINPASAHEYQYPPMMSSSSSLESSFFTHSSG
                     IADPPPPTEETFVSVEDKDEHLSPHQF"
     exon            252..323
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            324..489
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            490..652
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            653..736
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            737..855
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            856..969
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1100
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1192
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            1193..1396
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            1397..1775
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..2127
                     /gene="Ccdc17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgaaggactt ggagatgtag cagagttggt ctattctttg tctctttgct ctcttttctt
       61 tccagtctac cttttccctt ttaccacatc ctctgtagga cgctggtgtc tttaacagat
      121 tccatcccat ggccgattac tctgggaagt caggactttt gccctgtgag tcctgtgata
      181 tggttttccg ctccagagct ttgttggcca aacacaccaa gcgattctgc attggcggac
      241 tgactccgga gattatggca caagaacaga ggcgttcaga tcaggaggcc accaaatctt
      301 ctctaaagag actgacagag gagacggagt tgctgagact gtccctacag aaaataggtc
      361 cctgggcgac tgacacttcc cagactgcag ggagccctga ggagaggctg cgagacttgc
      421 agggaacacg agccagacgc gtggaggaaa ctgaagcgca aagccgagcg ctgaagcaac
      481 gcggcgaaga attaaaacgg cgcctccaca gcgtagcggg acccaaggga ggattacccc
      541 gcccaatagt cttggagcgc gaactcagag aactcaggga agaggccagc cggacacggg
      601 gagcgctgca aacgttagga gcgcgtgttc aggcgctcca gcctcagccc gcccaccagc
      661 aggacgccaa aagggtagtg gaattctgtt gcctgcccct acggtacaac ccggaaacgc
      721 ttgctgaaga gatccgggtg ctacgtgagg tctacgtgcg cggtggaggc cgggacccag
      781 aagttctgga caaaatatta caactgcaag tggaggcgtc agcactggaa ttgcggcggt
      841 cgcaaaaccg caaggaaaaa gcaagtgccg cctctgagga ggctctaatg gtggaagccg
      901 aaaacaggat cctggaggca gaaattctgg ccttgcagaa gcagaaagtc ctgagtctgt
      961 cgccctgggg ttccagggat ctctggcgac acttgagtag aaggagtgat aactccctcc
     1021 tccctccacc agttgcaccc ccaatgccac cagttacaag ttccacaaaa gtccaggact
     1081 tccacggcac ttcaaaggct ataattaatg gaaccatgac aagaaacttg ggtctggatc
     1141 tccacttcct accagcatcg aatgttctag gtcctgcacc ctatgatcct ggggctggcc
     1201 ttgtcatttt ctatgacttc ctgcggggcc ttgaggcttc ttggatttgg gtgcagctaa
     1261 tgacaagctt ggcccgagat ggacaggata caggaggggc cacagcacta cctccagcac
     1321 tttgcttgcc gccaccttca gcttctggac ctataggcaa ctgtgctatc ctcgcaagca
     1381 ggcaacctgt gccgaggctg cctccatcac cactgctatc tttgatctgc aaactacagg
     1441 cctggcaggg tgttacatgg acaccacaac caaaggcttg ggcctcacta ctgctatttg
     1501 accaaagtct gagggtgctt agtggccgtt ggcgcctccc acttcgggtc cctcctacca
     1561 ccagcctcag ctttgcccag atgaatgaga tgccccaggt aagtgtagag ggtagagact
     1621 ggttgcaccc caagattcca atggagtacc acttcctctg tcaggccggc caagctgagc
     1681 tctttctgag gctggtaaac gcaagagata cagatgccca gacattggca gagatcaatc
     1741 cagcaagtgc ccatgagtac cagtacccac caatgatgtc cagttcatct tccctggaat
     1801 ccagtttctt cacccacagt tctggcattg ctgaccctcc acctcccaca gaagagactt
     1861 ttgtcagtgt cgaggataaa gatgagcact tgagtcctca ccagttttga aggaaacact
     1921 aatttctaga cctgcagctt ttaaaatggg gtcttacagc agcagcaaac atttgatcct
     1981 taaatactgg gtggctacaa agaacactaa acctgctttt cttaaactag ccaactttat
     2041 ataaaaagcc aactaatttt cttctgcatt tactttcctt ttataaagca gatccaggaa
     2101 taaatgacct caaaatattt agtcaaaaaa aaaaaaaaaa a
//
