LOCUS       NM_001130509            1727 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus coiled-coil domain containing 166 (Ccdc166),
            transcript variant 1, mRNA.
ACCESSION   NM_001130509 XM_001058931
VERSION     NM_001130509.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC160829.1.
            
            On Jul 2, 2009 this sequence version replaced NM_001130509.1.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript but encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-661               BC160829.1         1-661
            662-1727            BC160829.1         765-1830
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1727
                     /gene="Ccdc166"
                     /note="coiled-coil domain containing 166"
                     /db_xref="GeneID:680799"
                     /db_xref="RGD:1588167"
     exon            1..661
                     /gene="Ccdc166"
                     /inference="alignment:Splign:2.1.0"
     CDS             227..1603
                     /gene="Ccdc166"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 166"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 166
                     isoform 1"
                     /protein_id="NP_001123981.2"
                     /db_xref="GeneID:680799"
                     /db_xref="RGD:1588167"
                     /translation="MAPKKKRGQNAGRKQAGQSGEPQLSERGQYLQREYAMLSESLAV
                     CEQRIDEVLQSNAFLNSEAQRLKEENRLFVGYVSAHALRCANAIVRLEDQNRTDLAQI
                     RWQRAELASFYHGREDGVRAQLQEMKKRAENMTQQVQELQPYKELQLEQLARIRTLER
                     ELLHMRVEHTQLLHQVKQRFLDDKSAFEREARLHVQSLTRRAEREAALSLISHAQALK
                     ADNGRLRQELMRLLQRAQLLQNMRQQLLEQREQLRREHVDMQNLEHMHGWLHRGPGGP
                     PLWQPPQSHQPNLRIGSFVTALDSTQHMLRAQAAPQSFSSSRVPSVDQSHRASRSPSV
                     LSSESFPGRSLKAGSVIAPRSSSGLRSRVSSLTPSRRGSRISSVTPSRKGSTVPSMTS
                     GPLRPREDSRLSPQPSLREMSSETDTPAKSSSKLFSGLSEDHFPLSPQLEETENTVDN
                     TQTVLEQA"
     exon            662..1701
                     /gene="Ccdc166"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggatgcga aagccgtggt ccagagggag tgctcatata cagattggct acggtgctct
       61 ctgatcctta atcccgcctg ctctgaacct cataaactga agacacatcc ctgaacctag
      121 ggtgtggttc ttcagaattt ttgggttaag gagggggagt aactgagctg ggggagcggg
      181 tggagcacgg tgttctcatg agtccagttg gcctgggtct caagccatgg cgcccaagaa
      241 gaagcgcgga caaaacgctg ggcgcaagca ggcgggccaa agtggggagc cacagctctc
      301 ggagcgcggg cagtacttac agcgcgagta tgcgatgctc tcggagagcc tggcggtctg
      361 tgagcagcgg atagacgagg tgctgcagag caatgcgttc ctgaacagcg aggcgcagcg
      421 cttaaaggaa gaaaaccggc tttttgtcgg ttatgtgagc gcgcacgctc tgcgctgcgc
      481 caacgccatc gtgcgcctcg aggaccagaa ccgcacagac ctggcgcaga tccggtggca
      541 gcgagcggag ctggcgtcgt tttaccacgg ccgcgaggac ggggtgcgtg cacagctgca
      601 ggaaatgaag aagcgcgcag aaaacatgac acagcaggtg caggagctgc agccctacaa
      661 ggagttgcag ctggagcagc tggcacgaat ccggaccctg gagcgtgagc tgctgcatat
      721 gcgcgtggag cacacgcagc tcctccacca ggtgaagcaa cgcttcctgg atgataagtc
      781 tgctttcgag cgggaggcac gcctgcacgt gcagtccctg acacgtcgcg cagagcggga
      841 ggcagcgctt tcccttattt cccacgcaca ggccctcaag gcagacaatg ggcgtctccg
      901 acaagaactc atgaggcttc tccagagggc ccagttactg cagaacatgc gccagcagct
      961 gctggagcag cgggagcagc tgcgccggga gcacgtggac atgcagaacc tggagcacat
     1021 gcacggctgg ttgcacaggg gtcccggagg gccaccactc tggcagccac cccaaagcca
     1081 ccaacctaac ttgcgcatcg ggtcatttgt caccgcgctg gactcaacac aacacatgtt
     1141 aagagcccag gctgcacccc aatcattttc gtcctcccgg gttccatcgg tggatcagtc
     1201 gcaccgagcc tccaggagtc catccgtact gtccagtgag tctttcccgg gccggtctct
     1261 taaggctggg tctgtgattg ctccccggag ttcatccggt ctaagatctc gagtctcatc
     1321 tctgactcca tcacgcaggg gctcgcggat ctcatccgtg accccgtcac gcaagggctc
     1381 cacagttcca tccatgacct caggtccctt gcggccacgg gaggactctc gactctctcc
     1441 gcagccctcc ttgcgtgaga tgtcttcaga aactgacaca cctgcaaaat ccagctccaa
     1501 gcttttttca gggctgtcgg aagatcactt ccctctcagc ccacaattgg aagagacaga
     1561 aaacactgtg gacaacacac aaactgtctt ggagcaagcc tgaacataca cgagggggca
     1621 ggccaatagg tcatggagtg gggagacata ccttggaaga tttcttggtg cataaatatg
     1681 ttaataaaag tgtaaaatga aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
