LOCUS       XM_039092664            4253 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 158
            (Ccdc158), transcript variant X3, mRNA.
ACCESSION   XM_039092664
VERSION     XM_039092664.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092664.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4253
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4253
                     /gene="Ccdc158"
                     /note="coiled-coil domain containing 158; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:289502"
                     /db_xref="RGD:1308523"
     CDS             802..4173
                     /gene="Ccdc158"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 158
                     isoform X1"
                     /protein_id="XP_038948592.1"
                     /db_xref="GeneID:289502"
                     /db_xref="RGD:1308523"
                     /translation="MDSKTCESKKEDLLSSGVISKGGSSSPFFVTSTHGAIIENTSSA
                     GTLTQIPFFPKYEVELDSPRKSTSYPGKEHIERVLEEYSQQVKDLQRRLNESNELHEK
                     QKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVHELEAAKSLK
                     EDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEASGKKICEHDSMSTMHFRSLG
                     SAISKILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHE
                     VEITGLTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRE
                     TKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL
                     SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMA
                     AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKE
                     RAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEIL
                     RQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEA
                     RVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNF
                     RNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRG
                     QIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQE
                     RRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNS
                     SMKPRLLQPASVARSHSNVPSSQSTASFLSHHSLKTNTLKEDPTRDLKQLLQELRSVI
                     NEEPAMPLSKTEEETPSLGALEDRVRDCITDSSLRSELCHRSNNSLRESTEGSKSSET
                     LSREPVALHPGDLEDPSSCFTFTSTASPSVKISASRSFNSSPKKSPVHSLLTSSAEES
                     VGSTPQYRSAKPVHSSNSAKVSVTRNNRKNMPKTAEQTGKFANPGRRLTAEEPSNVFN
                     DQKSREENSESERPGKDVTEMMSCLPAVYKELTYD"
ORIGIN      
        1 gagtgcgcct cgaggtacag ggctgggtcg ttctcttgaa gaccaggatc gtctcctgtt
       61 gttctggaac tttccacggc cttgtttcca ggtggtagca gcctaatgac tttgtatggc
      121 tgttttagga gagttctcga gggacagtgg cgggaaaact gggctctgtg actgtggcgt
      181 cagttgcaga attccttggg cccaacaaga ctgctccctg ctcacctctt ccggcctggc
      241 tccttggaac ctctggaaga gatgggaaga cgtggacaga cagtggggtc tcgggctgtc
      301 accagtattc cttcccacat gagactgttt aacgccgtgt gactggagcc tcttgataat
      361 ccgcttcagt cctagatttt ccccctcagc aacagactcc ttccttcccc acaatactga
      421 agaagtcccc actcgagctg tcctagacat tgttcctgtt aaatgtcagg ttggctttag
      481 ggtcatggga atgcagaaga caagtgatgt ggactgataa ctacataaga ataaaggtcc
      541 agagttctga atctttccag agggagagtt ggacggactg ctaatgtgtg tacatacaat
      601 ccacgggagc gggaaaggta ttaatagaag taactgaaaa taagaatatc cagaaattaa
      661 gtctgccttt cagggagtga acaccaaccc tgtgaaattc ccagtcttaa gtttctgtag
      721 aagaaagaat gacaagaact gaatgaccct aacagggaag taagcgttca catccctaag
      781 aagaggtaga aaacggttaa catggactca aaaacttgtg aatcaaaaaa ggaagatctt
      841 ttatcaagtg gcgtcatatc caaaggaggt tcttcaagcc cattttttgt aacatctact
      901 cacggtgcaa taattgaaaa cacgtcttca gctgggactt taacacaaat tccctttttt
      961 cctaaatatg aagtggaact tgattctcct agaaagtcca cctcttaccc tggaaaagag
     1021 cacattgaac gtgttttgga agaatattca caacaagtta aagatttgca gagaagactg
     1081 aacgaaagca atgaattaca tgaaaaacaa aaattttact taagacagtc agtcattgat
     1141 ttgcaaacaa aacttcaaga aatgcaaatg gagagagatg ctatggctga catcaggcga
     1201 agggagagtc agtcccagga ggagttacga aatcagcttc agaatacagt tcatgagctt
     1261 gaagctgcca agtcccttaa ggaggatatg ctgaaggaca gcagcacaca gatagagcag
     1321 ctacgaaaac tgatgcttag tcatgaaggc gtgcttcaag acatccgatc ggtcttagtt
     1381 gactttgaag aagcctcagg caagaaaata tgtgaacacg acagcatgtc taccatgcac
     1441 ttccgcagcc tgggctcagc tattagtaaa atcctaagag aattagacac agagatctct
     1501 tttcttaaag ggaggatctt tccagtagag gatcagcttg aaaccctgaa gtctgaatca
     1561 cagaataaaa tagaactatt acttcaacaa catcaggatc ggattgagca gctgataagt
     1621 gaacacgaag ttgagataac aggacttacg gagaaagcca gcagtgctcg aagccaagcc
     1681 aacagtgtcc agagtcaact ggaaataatt caagagcagg cgaggaacca gaactccatg
     1741 tatatgcgcc agctcagtga cttggagtct actgtctctc agctgcgttc tgaactgagg
     1801 gagaccaaga ggatgtatga agacaagata gaagagctgg agaagcagtt agtccttgcc
     1861 aattcagagc tcaccgaggc acgcacagag cgggaccagt tcagtcagga gtcgggaaat
     1921 ctggatgacc aactccaaaa gctgttggca gatctccaca agagggagaa ggagcttagt
     1981 ctggagaaag aacagaacaa gcgtctgtgg gaccgagaca caggcaacag catcaccatc
     2041 gaccacctgc ggcgcgagct ggatgaccgg aacatggagg tgcagcggct ggaggccctg
     2101 ctcaaggcca tgaagaacga gtgtcagggc cagatggagc ggcagatggc agccattcag
     2161 gggaagaacg agagtctgga gaaagtgtcc tccctcactg cacagctgga gtccaccaag
     2221 gagatgctgc gcaaggtggt ggaagagttg acagccaaga agatgaacct tgagagctct
     2281 gagaggacag tgtccgactt gaccgcttcc ctccaggaga aggaacgcgc catcgaggcc
     2341 accaatgcag agatcacgaa gctccgctcc cgggtggact tgaagttaca ggagctccag
     2401 cacctgaaga acgaggggga ccacctcaga aacgtgcaga cggagtgcga ggcgctcaga
     2461 ctgcagatgg cagaaaagga caaggtcatt gagattctga ggcagcagat tgagaacatg
     2521 acgcagctgg ttggccagca cggacggacg gcaggtgcaa tgcaagtgga gaaggctcag
     2581 ctggagaaag agattaatga ccggaagctg gaactgcagg agtttaagat cttaaaagat
     2641 aaaaaagatg cgaagatccg ggagcttgaa gccagagtga gtgacctgga actggagaag
     2701 gtgaagctgg tgaatgcagg ctccgagcgt ctccgagcag tgaaggacat cagacaggag
     2761 agagatcagt tgttaaatga ggtgaagact agtaggactg aactgaacaa cctctcagag
     2821 gactatgaag tcctaaagag gaacttccga aacaaaagtg aagagatgga gagcactaca
     2881 aacaggctga agatgcagct caagtcggcg cagtcagaac tggagcaaac aaggaacacg
     2941 ctcaagacca tggaaggatc cgatggccac gctatgaagg tggcaatggg catgcagaag
     3001 caaatcacag ccaagagagg ccagatcgat gccctgcaga gcaaggtgca gtttttagaa
     3061 gaggccgtga caagtgccaa taaggagaaa cactttttga aagaagagaa gagtaagctc
     3121 agccaggagc tgagcaccgt agcaacagag aaaaacaaga tggctgggga gttagaagtg
     3181 ctgcggtctc aggaacgacg cctgaaggag aaggttgcca acatggaagt cgctcttgac
     3241 aaggcatctt tgcagtttgc agagtgtcaa gatataatac agcgccagga acaggagtca
     3301 gtgcgtctaa aacttcagca cactttggat gtgaaagaac ttcagggccc tggatacacc
     3361 tctaattctt caatgaaacc tcgccttctc cagccagcct ctgtagctcg gtctcattcc
     3421 aacgtaccat cctcccagtc tacggccagc ttcctgtctc accactcttt aaaaaccaac
     3481 acactgaagg aggacccgac gagggacctg aagcagcttc tgcaggagct gagaagtgtg
     3541 atcaatgagg agccggccat gcccctgagc aagaccgagg aggagacccc atctcttggt
     3601 gcactagaag acagagtaag ggactgcatc actgactcaa gcctgagatc agagctctgc
     3661 cacagaagca acaactcctt gagggagtcc accgaaggca gcaaatccag tgagactctc
     3721 agcagagagc cagtcgcact gcatccagga gacctggaag atccgtctag ctgcttcacg
     3781 ttcacatcta cagcaagtcc atctgtgaaa atttcagctt ctcgttcatt caattcctct
     3841 cctaaaaagt ctccagtgca ctccctcctc acgagctcag ccgaggagtc ggtgggctcc
     3901 acaccgcagt accggtctgc caagcctgtt cattcatcca actcggcaaa agtctccgtc
     3961 actagaaaca acaggaaaaa catgccgaaa actgcagaac agactggaaa gtttgcaaac
     4021 cctggtagaa gacttacagc tgaagaacca agcaatgtct tcaatgatca gaaatcaaga
     4081 gaagagaatt cagaaagtga aagaccagga aaagatgtta ctgaaatgat gagttgcttg
     4141 cctgctgtct acaaagagct gacatacgat tgatcgtggt gttctttata attagtgccc
     4201 tgcaaacttt tttcttttta tgtgaaattt aataaaagat accctgtcct gta
//
