LOCUS       XM_017597601            2761 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 154
            (Ccdc154), mRNA.
ACCESSION   XM_017597601
VERSION     XM_017597601.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597601.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597601.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-618               JACYVU010000219.1  2210585-2211202
            619-829             JACYVU010000219.1  2211446-2211656
            830-1019            JACYVU010000219.1  2211770-2211959
            1020-1066           JACYVU010000219.1  2212150-2212196
            1067-1162           JACYVU010000219.1  2212478-2212573
            1163-1286           JACYVU010000219.1  2212873-2212996
            1287-1388           JACYVU010000219.1  2215784-2215885
            1389-1517           JACYVU010000219.1  2216382-2216510
            1518-1642           JACYVU010000219.1  2216584-2216708
            1643-1769           JACYVU010000219.1  2217005-2217131
            1770-1907           JACYVU010000219.1  2217205-2217342
            1908-2027           JACYVU010000219.1  2218962-2219081
            2028-2104           JACYVU010000219.1  2219204-2219280
            2105-2222           JACYVU010000219.1  2219542-2219659
            2223-2309           JACYVU010000219.1  2219793-2219879
            2310-2497           JACYVU010000219.1  2220152-2220339
            2498-2585           JACYVU010000219.1  2220430-2220517
            2586-2586           "N"                1-1
            2587-2761           JACYVU010000219.1  2220518-2220692
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2761
                     /gene="Ccdc154"
                     /note="coiled-coil domain containing 154; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:287131"
                     /db_xref="RGD:1559998"
     CDS             612..2621
                     /gene="Ccdc154"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: coiled-coil
                     domain-containing protein 154"
                     /protein_id="XP_017453090.1"
                     /db_xref="GeneID:287131"
                     /db_xref="RGD:1559998"
                     /translation="MSEPADGPSLGLSPPQLSTVTLEDLELLLTEGLASHEPSSTESL
                     EKYECSGLVSNSLVPEQDTPKQWKQLEQWVAELQAEVVRLRGHKERCEHATLGLLQEL
                     LQVHARVQMQASELRQLRQEVQQAAWSPEKEELELSGPQSQDQMQALDKRLVEVREAL
                     THIRRKQALQDSERRHAEQEINLRLTNLTAMLSQEEQGREAACSALQKNQEDTSQKVD
                     LESAKMQAQMMKLNEEISLRFLKREAKLCGFLQKTFMVLEQRMKSSETARLSAESSLR
                     EELETRWQKLHELTEESLRVLRAQREEEEGHLLEQCRGLDKAVVYLTKFVQQNQVSLN
                     RVLMAEQKAREAKVSLEETQAEELASYVHENLEAVQMAGKLAQQETQDALELLQEKSQ
                     VLEGSVAGLDQQLKDLSDHCLALSWRLDLQEQTLGLKLFQAQAAWEGVERESLQDLAQ
                     WLTEVSAHLQEVQERVSSLPQQIESVSNKCVLYKSDVDVKISAEGKAREFEVETVRQE
                     LAALLMSVQLLKEENPGRKIAEIQGQLATFQKQMIKLENSLQANKTIQNLKFNNETKL
                     RTEEIATLRESMLHLWSEEGPWPLTLGSKRVFMSLVRQRFFIKDVALGELVPVNSWGV
                     YQAVRWLHWKTVLLNLVTQKRPGVNSAMTQCRPAXKVTSLTMFQK"
ORIGIN      
        1 accacctctc caccatgccc ataacccagt agccccagag ccagaggagg ctttccagca
       61 aggggcatgc ttcattgtcc ccccccaaat ccttctgggg accagaagtt agggagtcca
      121 caggacaggg cagatgagag ctcaagttcc attggcagtt ggccatgaag ccatagggtt
      181 ctggtgagaa aaagattccc agaataactc agctgtacct gcctcctcgg gatccactaa
      241 agaggcaagg tggaagggca ggagccgcta cctcatacct ccactactct caggtccaca
      301 gcctctcctc ctgactcatc ttctcccgaa gattcagtct ccactccctt gtcttctccc
      361 caagatccag accttccttc ttgagcctta ctttcctgag tcccacagcc tttcctaaat
      421 cctggcctcc tctgtggccc aaagccttct cttctcccct caatgatccc agttcctgca
      481 gctttctggc ctggattact ggcttctctc cagccaacca ctcggctacc ccggcctggt
      541 gttcagcctt gggtcaccat agggccactg acatcattac ctgaacaaca ggtgtggctg
      601 ctggtgaaac catgtcagag ccagctgatg gcccctcact cgggctttcg cctccacaac
      661 tgagcactgt caccctcgag gacctggagc ttctcttaac agaaggccta gccagtcacg
      721 agccctcgag taccgaaagc ttggagaaat atgagtgcag tggactggtg tccaactcct
      781 tggtccctga acaggacacc cctaagcaat ggaaacagct ggagcagtgg gtagctgagc
      841 tgcaggctga ggtggttcgc ctgaggggac acaaggagcg ctgtgagcat gccacattgg
      901 gcctgcttca agagctgttg caggtccatg cccgagtgca gatgcaggcc tcagagctgc
      961 gccagctgag gcaagaggtg cagcaggcag cctggagccc agagaaggag gaactagagt
     1021 tgtctgggcc ccagagccag gaccagatgc aagccctgga taaaaggctt gtggaggtcc
     1081 gagaggcttt gacacacatc aggaggaaac aggctctaca ggactcagag cggagacatg
     1141 ctgagcagga gataaacctc aggctgacca acctgactgc catgctgagc caagaggagc
     1201 agggccgaga agcagcctgc agcgcattgc agaaaaacca agaggacacc agccagaagg
     1261 tggaccttga gtcggccaag atgcaggccc agatgatgaa actcaacgag gagataagcc
     1321 tccgcttcct caagagagag gctaaactat gtggttttct gcagaagact ttcatggtct
     1381 tggagcagag aatgaaatcc tccgagactg cacggctgtc ggcagaaagc agcctgcgag
     1441 aggaactgga aacccgctgg cagaagctgc atgagctgac ggaggagagc ttacgggtct
     1501 tgcgggcaca gcgtgaggaa gaggagggtc acctgctgga acagtgccgg ggcctagaca
     1561 aagctgtggt ctatctgacc aagtttgtgc aacagaacca ggtgtcactg aatcgagtcc
     1621 tgatggctga gcagaaggcc cgggaggcca aggtgagctt ggaggagacc caggctgagg
     1681 agttggcttc atatgtccat gagaacctgg aggctgtaca gatggctggc aagctagccc
     1741 agcaggaaac acaggatgca ctggagctgc tccaagagaa gagccaggtc ctagaggggt
     1801 cagtggcagg gctggaccag cagctaaagg acctgagtga ccactgtcta gctctgagtt
     1861 ggaggctaga tctgcaggag caaacactag gcctgaagtt gttccaggca caggccgcat
     1921 gggaaggtgt ggagagggag tccctgcagg acctggccca gtggctgaca gaagtctcag
     1981 ctcacttgca ggaggtgcag gagagagtga gcagcctccc ccagcagata gaaagtgtct
     2041 ccaacaagtg tgttctttac aagagtgatg tggatgtgaa gatctctgct gagggcaagg
     2101 ccagggagtt tgaggttgag actgtgcgac aggagctggc tgccctgctg atgtctgtgc
     2161 agcttctgaa agaggagaac cctggacgga agattgcaga gatccagggc cagctggcca
     2221 cgtttcagaa gcaaatgata aagttggaga acagccttca ggccaacaaa accatccaga
     2281 acctgaagtt taataatgag accaagctgc gcacagagga gattgccacc ctgcgtgaga
     2341 gcatgctgca tctgtggagt gaggagggtc cctggcctct gacactgggc agcaagcgag
     2401 tattcatgtc cctggtgagg cagcggttct tcatcaagga cgtagccctt ggcgagctgg
     2461 tccctgtgaa ctcctgggga gtgtaccaag ctgtgaggtg gcttcattgg aagacagtcc
     2521 tcttgaactt ggtgacccag aaaaggcccg gagtgaactc ggcaatgacc cagtgtaggc
     2581 ctgcantcaa ggtcacatct ctgactatgt tccagaaata aacatgccag ttcttgtacc
     2641 tgttggagtc agagtctcct gtcgtctgct gggatggctt ctctacgact cacaggcctg
     2701 acaagggtgt caagtagtga gagggaaacc cagaaggccc aagttattag acgttgaaga
     2761 a
//
