LOCUS       XM_039092757            3594 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 149
            (Ccdc149), transcript variant X1, mRNA.
ACCESSION   XM_039092757
VERSION     XM_039092757.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092757.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3594
                     /gene="Ccdc149"
                     /note="coiled-coil domain containing 149; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 44 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:688939"
                     /db_xref="RGD:1582968"
     CDS             378..1985
                     /gene="Ccdc149"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 149
                     isoform X1"
                     /protein_id="XP_038948685.1"
                     /db_xref="GeneID:688939"
                     /db_xref="RGD:1582968"
                     /translation="MDGDRTESDWQGLVSEYLVCKRKLESKKEALLILSKELDTCQQE
                     RDQYKLMANQLRERHQSLKKKYRELIDGDPSLPPEKRKQANLAQLLRESQDRNKHLGE
                     EIKELRQRLGEVQGDNKLLRMTIAKQRLGDEEIGVRHFAAHEREDLVEQLERAKEQIE
                     SLEHDLQASVDELQDVKEERASYQDKVDRLNQELNHILGGHENRIIDVDALCMENRYL
                     QERLKQLHEEVSLLKSNIAKYKNALERRKNSKTQGKSNSSALTGVLSAKQVQDLLSED
                     HGCSLPATPQSIADLKSLATALLETIHEKNMVIQHQRQTNRILGNRVAELEKKLRTLE
                     VSGLWSLPGLSYNVSVGFGRGKDTILLSDQTLPTIQKSKSPLLKFVEQPTESKESARD
                     GEIQTQERDESRAAAEALTVPEDAGRPAVSSPAPPSNANQHSDFHHPPVPQPLSEEVN
                     TVGGREITQLTDGQEATDLEEVPREAPTEEQRCEPQPSPSSLSQEECIVTLQDHLPSM
                     QPEVKATSTGGDRGISEGGDTRSTVQT"
ORIGIN      
        1 cacccacctg ttcgccagcc tccctccctc accgtaggcc tgggaatgct agagtctggg
       61 gttgtgtgaa gactcacaag caggctccct tctctaggag acacagctgg tggcctgggg
      121 tccccggggt gtcccggctg gcgcctgccc cgagtcactg tagggcagtg gttggggccg
      181 gctcctcctc cctttcctcc gcggaggctg acgtggtggc agcggcgcgg gcggtcgcgg
      241 gaggcggcgg cgcggaggct cggaggtgcc gggccctctc tgggctgcgc ggggtcgggg
      301 tggcggcggc ggcgacaaga gccggaggag gagaagggag gcgtccgtgc agcctgttcg
      361 cgcaagccgg aggggacatg gacggcgatc ggaccgagag cgactggcag gggctggtga
      421 gcgagtacct ggtgtgtaaa cggaagctgg agagcaagaa ggaggctcta ctgatcctct
      481 ccaaggagct ggacacctgc cagcaggaga gggaccagta caagctcatg gccaatcagc
      541 tgcgagaacg acatcagtcc ctgaagaaga agtatcgaga gctgattgat ggagatccat
      601 cacttccccc tgaaaagagg aaacaggcta atcttgcgca gctgctgaga gagtcacagg
      661 acaggaataa acatctggga gaagagatta aagaacttcg gcagaggctt ggcgaggtcc
      721 agggtgacaa taagctgttg aggatgacaa ttgctaaaca aaggctcgga gatgaagaaa
      781 ttggcgtgag gcactttgca gcccatgagc gggaagattt ggttgagcag ctggagcggg
      841 ctaaggaaca gatagagtca ttagagcatg acctacaggc ttcagtggat gaacttcagg
      901 atgttaagga agaacgggct tcctaccagg acaaagtgga caggctgaac caggagctca
      961 accacatcct gggtggtcac gagaaccgaa tcatcgatgt ggatgctctg tgcatggaga
     1021 acagatatct ccaggagaga ctgaaacaac tgcatgagga ggtcagcctt ctgaaatcca
     1081 acatagccaa gtacaagaat gctctcgaga gacggaaaaa ttccaagacc caaggcaaat
     1141 ccaacagtag tgctctgact ggggtcttgt ctgcgaaaca agttcaggat ctgctctctg
     1201 aagaccacgg gtgcagcctc ccagctactc ctcagtccat cgctgacctg aagtctctgg
     1261 ccactgccct gctggagacc atccatgaga aaaacatggt cattcagcac cagaggcaaa
     1321 ccaacagaat ccttgggaat cgagtggcag agctggagaa gaaactaagg actctggaag
     1381 tttctggttt gtggagtctt ccaggcctga gctacaatgt ttcagtcgga tttgggaggg
     1441 gcaaggacac catattgctc agtgaccaga ctctccctac catacagaag tcaaagtccc
     1501 cactgctgaa gtttgtggaa cagcccactg agagcaagga gagtgccagg gatggggaga
     1561 ttcagacgca ggaacgagat gaaagccgtg cagctgctga ggcgctgaca gtgcctgagg
     1621 atgctgggag gcctgctgtc agctccccag ccccaccgag caacgcgaac cagcactcgg
     1681 actttcatca tcctccagta ccccagccac tatcagaaga agtaaacacg gtgggaggaa
     1741 gggagatcac tcaactgact gatggacagg aagctacaga cctggaggag gtcccaaggg
     1801 aggctcccac ggaggaacag aggtgtgagc cacagccgtc cccatctagc ctctcccagg
     1861 aggaatgcat cgtaactctc caggaccact tgccttccat gcagccagag gtcaaagcaa
     1921 ccagcacggg aggtgacaga ggcatctcag agggtggaga cacaagaagc actgtgcaaa
     1981 catgaggggg agagagactg acagggtgac acactgaagg cactggggac agcgaggaaa
     2041 ggctacggcc tcagaacaat catccaaggc actttctgct aaacaccttc ctgtctgcaa
     2101 atgagaaaac actctgagcc tgctacgagc tgggaacacc caatggtgcc agccctgtct
     2161 gatttattaa agctggcctg tgagcttctc ggtgtcacct ctgtctgctg aagacgtgct
     2221 gctgtgaaca tggctgggca aaggaatcgt ggttgccata tggctgcctt cccacatccc
     2281 tcttcctgtc agcatttgtt ttattagaga gaagatgttt ttctattagc atttaatgtt
     2341 gtccatcaag atgatgggac aagctaggaa agcaagggtt tttttctccg cccctgggtc
     2401 tccgtcttgg gaatagctag gtggctggaa ggaaagatgt aattgaatga aatgtgttca
     2461 tgaggctagg gctacacttt gtcatgtagt ggtctcggag ggtcccccag caatggggag
     2521 tcttggcacc cagtgtttca cagtggcggg tgggagggac aagagcaggc tgagaacgtt
     2581 aggctgcagg taggagaggc tgtttgttga ctgagtgcag atctgagtgt tctagcctag
     2641 gtctggaggt ttcactggtc aggagggatg ggtaacaagt agctgccaga agtaggggac
     2701 cttttagtgg taatctgatt tttgtgttat tgttatttag ataatattag aaatactagg
     2761 ctgtcttcat cggatggtgt ggttatctgg ggtttgggaa aagcttactg ttatcccagt
     2821 ttcttacacc accgaagaat ctgaaagcat tctctccatc agcagaattt tccatatagg
     2881 cccccagcat ccagaattga tctcagaaac tccaggtaga aggagaagct cagaggagaa
     2941 atgtgttccc attcatccta aaacctggga ctcttgggga caaggacaca ccttctggtg
     3001 ggagccccaa tgccctgttt atccctcgta tttcagtctg tcccctgccc ctgaaggcca
     3061 gtcctctagg gaaggaggcc ctgaggctgt aagtttacac gtaccaatag tcctgaaggt
     3121 gccttttgtg ctatatgggg gccatagctg gctttcagct gcacatggtc agtattacta
     3181 cagaggacaa cggaatggcc aagggaaacc cagccagatg tgactcagta aaaagaaaat
     3241 aaacactctc accccccaga agctctggtt tggacgaaac aggtatactt ctttgtggcc
     3301 agtcttcact ttcaggtaac aggggtttat agtaaactct agcagagtct agaaaggcaa
     3361 gaaactgcag tgagtctcag ggtttgtgct ctagggagcc aggataatag gggtccatag
     3421 cttgagctca atagatgcag ccagcacagg aggcacctgt gttattagat ggggtgagcc
     3481 agtaagttga cattgttata aatatgtaac tatgacaaca acatccctag ttctgctgtg
     3541 tctacccaac atgattcttc tattctgcag acattaaaga gagtccagtc acta
//
