LOCUS       XM_039103618            2205 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coiled-coil domain containing 144B
            (Ccdc144b), transcript variant X1, mRNA.
ACCESSION   XM_039103618
VERSION     XM_039103618.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103618.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2205
                     /gene="Ccdc144b"
                     /note="coiled-coil domain containing 144B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:686106"
                     /db_xref="RGD:1585492"
     CDS             199..1848
                     /gene="Ccdc144b"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 26-like
                     isoform X1"
                     /protein_id="XP_038959546.1"
                     /db_xref="GeneID:686106"
                     /db_xref="RGD:1585492"
                     /translation="MEDLGDLTQSSETASECGKFPSPNYEAILKLIERLSLECKDSGS
                     LLKIQNAVYSYKRLIQLKNGHCKVLQGKLQVVEKEVSGLRKKLTDAEREQLEQEQELC
                     NVRFTLKQEEEKRKNVDWIYNKIKEQLREKEEQYNKEVKARQKLEIRIRELDVEMKTV
                     RNNLNKVLEERNCMERQLLQEQKARILQDGILASHLHKQKELKLAQEKISSQLQEALE
                     QRRQPSQCATKMQDCVQKLGLENHMLKATARKQAEKIEQLKKNLLSEFLSDDLTAKLE
                     TATSKCLHLYKQNQLLQRELLSMKMIQRKYEKLKKHKKKLEQEIANLRSHMEQHMIEC
                     GQIEQYKWEIEEKTKQDLVEKLKQVNLFLQAQAAYEDKLEKLRHKQNASVRTQMELRI
                     RDLESEFSKMKSQVDCNQIEMENYKQLYLEEVKIRKSLSNKLSKTDERLAEVKTKLLL
                     ERKQNRASQYSMVDIRPVLESTCPRDSNRFFTPRSFSRENMLSTSNLWLSVETMENCK
                     TKVLQEWERSITRELRQGIVIREEGASIDEMSGDTIGEAKN"
ORIGIN      
        1 ttgcaacatg gggtgcagcg gctatcaaag acaacagaac acgtgctgcc caggactccc
       61 agaggcctct gcgcctagcc ataaccctca cgagtctacc gcgggacggt tgaaccctcc
      121 aggaaagggg acatggctag agacaactgt gagctcttgt attttcggtg aagaggtcaa
      181 aaagaaaatc tgcctactat ggaagatttg ggtgacttaa ctcagtcatc tgaaacagcc
      241 tcggagtgtg gcaagtttcc ctcccctaac tatgaagcta tactgaagct aattgaacgt
      301 cttagcttag aatgcaaaga ttctggtagc ctactaaaaa tccagaatgc agtttattca
      361 tataaaaggt taatacagct gaaaaatggt cactgcaaag tacttcaagg gaagcttcaa
      421 gtggtggaga aggaagtcag tggactccgt aagaagctta cggatgcaga acgtgaacaa
      481 cttgaacaag aacaagaact ctgcaatgta aggtttactt taaaacaaga agaggagaag
      541 agaaaaaatg tggactggat ttataacaaa ataaaggaac agctaagaga aaaggaagag
      601 caatataata aagaagttaa agcgagacaa aagctcgaaa ttcgtatcag ggaactggat
      661 gtggaaatga agaccgtgag aaataatctt aacaaagttt tagaggaaag aaattgcatg
      721 gagaggcaac ttctgcaaga acagaaagcc agaatcttac aggacgggat tctggcaagt
      781 caccttcaca aacaaaagga gctaaaactt gcacaagaaa aaattagttc tcagttacaa
      841 gaagcactgg agcaacgcag acagccctcc caatgcgcta cgaagatgca ggactgcgta
      901 caaaaacttg gacttgaaaa tcacatgtta aaagctacag caagaaagca agcagagaaa
      961 attgaacagt taaagaaaaa tctactcagt gaatttttga gtgatgatct tactgcaaaa
     1021 ctggaaactg caacgtccaa atgtctacat ctctataagc aaaatcagct gctccagcgg
     1081 gagttactct ctatgaaaat gatacaaagg aaatatgaaa aattaaagaa gcataaaaag
     1141 aagttagaac aagaaatagc taacctcaga agtcacatgg agcagcatat gatagagtgt
     1201 ggtcaaatag aacagtataa gtgggaaatc gaagagaaga caaagcagga tttggtggaa
     1261 aaattaaaac aagtcaacct attcttgcag gcacaagcag cgtatgagga caagctagag
     1321 aagctaagac acaaacagaa cgcttcggtg cgaactcaga tggagctcag aataagggac
     1381 ctggagtctg aattctctaa gatgaaaagc caagttgact gtaatcaaat agaaatggaa
     1441 aactacaagc agctctacct agaagaagtg aaaattagaa aatcgttgtc aaataaatta
     1501 agcaaaacag atgaaagact ggcagaggtc aagaccaaac ttctcctaga gagaaaacag
     1561 aacagagctt cacagtacag catggttgac ataagacccg tcctggagtc cacctgtcca
     1621 agagacagta atagattttt cactccaaga agcttctcta gagaaaatat gctttctaca
     1681 tcaaacctct ggctttcagt tgagaccatg gaaaactgca agaccaaggt gcttcaggag
     1741 tgggaacgaa gtataaccag agaattaagg caaggtatag tcatcagaga ggagggagcc
     1801 tcaattgatg aaatgtcagg agacaccata ggagaagcta aaaactagcc ggtgagcatc
     1861 ctgggatagg gctgccttgg attaaaatct atgacagctc cagtaggcaa ggcccaggag
     1921 aaatccactt taggaaaact tgtggctatt aatatgctct tctgttatca ctaggtatta
     1981 acacacccct ttgagcagat ctctgcagac ctacagtctt gtagggatgc tatacagaca
     2041 aatagataat aattctatag aattcctgat ttgattcaaa tggttttagt aagaaagatt
     2101 ttagagatgg tcttagttgc taaaaagatg taataaagtt agaatcaaga atagaatgtg
     2161 cgggccagag agatggctca gccattaaag gctaggctca caacc
//
